LOC113534402


Basic Information

Item Value
gene id LOC113534402
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 3944987 ~ 3946376 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578345.1
AGTTAGCATTGAGATGCGTGTTTTGGGTAATTTGGTTTTCATGGATTTTAGTTTTATGGACAATTGTTGCATTGGTTGGTGGTTGCCCTCCTCCATCTCCCTTTTGCTCAGCGTTCTCCTTCGTTGGCCCTGCGTGTAAGTGCTCTTGGATGTCTTTTTGCATTCGCAAGTATGCATGAGATACATGGCAACACAAAGgaagaaTCGTTGAATTTGGGGCCAATTGTGTTTAATGAAGCTTGTGGGGTAACATTTGTTGGCACTGCTGCTTTGTCTGCATAGTTTCCTTTTTTCCGCATTTGCTTCTTGACGCGTTGGATACAGGGTTTTCGGACCTGTCTTTCAGcgcatgtttttctttttgttattttggttGTTGTACTTGTCTTTTCTTTAGGTTTAgtttttggttttctttatactgttctgtttgtttggtgtgtattttgttctgtttaaagttAACCAACAGAGATGATGGACGGCTTGGACACACCGTTTTAGAGCTGAGGCTTCCAGGCAGGCCGCTAGTCGACCCTAGTGTGTGGTGGTGGGACTCCAGCACGGGGTGCAGTGTGTGGTCACGCTTGATCTtgcgtgtgggtgtgttgtGACCTGTGCACCAGGGTGGCATAGTCAGCGACATCTTAACTAGTTTCTTCCATCAAGTTGTGGGGATACAAGAGACAAGAAAATGCAGGAGTGCCATCTCTAAAGACACAGAACAGCAATTCTTCCATCCAATCTGGCAGAAGTTGAAAGATTCTGCAGACTGTAATGGGAGAAGATTCCAAAATCAGAAACCAGGCTTGTAGCATCATACTAAAGATAAATTAAGGCTAATGAGAGTGcttaaaagtgcaaaatatttttaata
>XR_004578346.1
AGTTAGCATTGAGATGCGTGTTTTGGGTAATTTGGTTTTCATGGATTTTAGTTTTATGGACAATTGTTGCATTGGTTGGTGGTTGCCCTCCTCCATCTCCCTTTTGCTCAGCGTTCTCCTTCGTTGGCCCTGCGTGTAAGTGCTCTTGGATGTCTTTTTGCATTCGCAAGTATGCATGAGATACATGGCAACACAAAGgaagaaTCGTTGAATTTGGGGCCAATTGTGTTTAATGAAGCTTGTGGGttAACCAACAGAGATGATGGACGGCTTGGACACACCGTTTTAGAGCTGAGGCTTCCAGGCAGGCCGCTAGTCGACCCTAGTGTGTGGTGGTGGGACTCCAGCACGGGGTGCAGTGTGTGGTCACGCTTGATCTtgcgtgtgggtgtgttgtGACCTGTGCACCAGGGTGGCATAGTCAGCGACATCTTAACTAGTTTCTTCCATCAAGTTGTGGGGATACAAGAGACAAGAAAATGCAGGAGTGCCATCTCTAAAGACACAGAACAGCAATTCTTCCATCCAATCTGGCAGAAGTTGAAAGATTCTGCAGACTGTAATGGGAGAAGATTCCAAAATCAGAAACCAGGCTTGTAGCATCATACTAAAGATAAATTAAGGCTAATGAGAGTGcttaaaagtgcaaaatatttttaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578345.1 True 877 lncRNA 0.43 4 3944987 3946376
XR_004578346.1 False 662 lncRNA 0.45 5 3944987 3946376

Neighbor

gene id symbol gene type direction distance location
LOC113534400 LOC108264127,LOC108264128,LOC108264116,LOC108264184,LOC108264136,LOC108434034,LOC108264183 coding downstream 1024 3940497 ~ 3943963 (-)
LOC113534399 LOC108264127,LOC108264128,LOC108264116,LOC108264136,LOC108264184,LOC108434034,LOC108264183,LOC108264134 coding downstream 11297 3930554 ~ 3933690 (-)
LOC113534748 LOC108264127,LOC108264128,LOC108264116,LOC108264184,LOC108264136,LOC108264183 coding downstream 31869 3909969 ~ 3913118 (-)
LOC113534546 LOC108264127,LOC108264128,LOC108264136,LOC108264184,LOC108264116,LOC108264183 coding downstream 39507 3899911 ~ 3905480 (-)
LOC113534749 LOC108264126,LOC108264127,LOC108264129,LOC108264128,LOC108264131,LOC108264116,LOC108264184,LOC108264125,LOC108264130 coding downstream 53063 3883628 ~ 3891924 (-)
LOC113534747 LOC108264124,LOC108434067,LOC108434036,LOC108264108,LOC103037408,LOC108434043 coding upstream 13005 3959381 ~ 3962625 (-)
LOC113534401 LOC108264182,LOC108264187,LOC108437986,LOC107676311,LOC107569153,LOC107741377 coding upstream 18496 3964872 ~ 3968726 (-)
LOC113534613 LOC108264187,LOC108264182,LOC108437986 coding upstream 35743 3982119 ~ 3985740 (-)
LOC113534321 LOC108263927,LOC108437985,LOC108434028,LOC108434080,LOC108434027,LOC108434077,LOC108434030,LOC108434025 coding upstream 59407 4005783 ~ 4009934 (-)
LOC113534603 LOC108263926,LOC108263927,LOC108264122,LOC108434080,LOC108437985,LOC108434028,LOC108263928,LOC108434077 coding upstream 78651 4025027 ~ 4028395 (-)
G93639 NA non-coding downstream 209595 3735097 ~ 3735392 (-)
G93557 NA non-coding downstream 363781 3579017 ~ 3581206 (-)
G93505 NA non-coding downstream 490616 3425023 ~ 3454371 (-)
LOC117597513 NA non-coding downstream 522829 3406145 ~ 3422158 (-)
G93380 NA non-coding downstream 577792 3366721 ~ 3367195 (-)
G93707 NA non-coding upstream 208881 4155257 ~ 4155497 (-)
G93710 NA non-coding upstream 225697 4172073 ~ 4172312 (-)
G93716 NA non-coding upstream 237379 4183755 ~ 4183993 (-)
LOC117597614 NA non-coding upstream 285084 4231460 ~ 4231831 (-)
G93753 NA non-coding upstream 600063 4546439 ~ 4546705 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 396236 3425718 ~ 3548751 (-)
G93047 NA other downstream 1176689 2759612 ~ 2768298 (-)
G93046 NA other downstream 1193818 2749388 ~ 2751169 (-)
fam214a fam214a other downstream 1814197 2035941 ~ 2130790 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other upstream 124424 4070800 ~ 4073533 (-)
G93711 LOC101487076 other upstream 226912 4173288 ~ 4173594 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other upstream 270642 4217018 ~ 4220607 (-)
ss18l2 ss18l2,s18l2 other upstream 1693320 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 1767467 5713843 ~ 5786431 (-)

Expression


Co-expression Network