LOC117597587


Basic Information

Item Value
gene id LOC117597587
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 4966634 ~ 4971603 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578349.1
ATTGTAATATTTGGAATATTAGTGCACCACAAGCTCATGCACTGCTTTCTTCTAAAAAAGTCACGACCAAatgtatttacaatttatttttctgttgattttgatctttatttaaagaaggtcttacactgtgtgatttcagcGGTCTAAGATTATTgcccacattttatttttaacattttaaaatgtagataaGCAgtgggggatgcaaacttttgcactcagctgtggAAATATATACCCGGAAATATATAAAgactttataccacagcctggttgaattcttgaatctgattggtcagaaggtgtgcataaTTTTTGTATAACCGCACGTCTCGGACAGTGGTTCTGTAACAGTCACGCTGCTTTGTACATTCTCAGTGGGATTGGAACGTCTtccagacagaggagtttacgctttcgggtttcttggtaaaatgataagctgtgtttttttgtctcattaacttcaagagtgagagaggctggtgaagggaCAGCTGTTTAGAACATgagggataacaggaactaacttgtctcacagacattccataacatgaaatgtaaatataaacagtcaaAAAGCGTTcactaatgaataaaaaaattgcaattgttgCCAAACTGCTATGGTATGAATGTTATTTCATACAAAACCGTTTACTGatttataactgtgtgtgtgtctatgtgaaaTCTGAGCTCATGTCTACTGCAATTGGAGCAGCTCCAAAAATCTGCTCTTGCAACATACTGACTTTGGCGGTAAAGAGTTTGGCACTTTATCAAGCTTTGCAGGATGATTTCATGCCACTGATGAAATTATGTCATCAtcctactgaagaaaaaaactctCATGCATTGCGAAATTGCTGCTTTGGAAGCGATTGTGCGAAGACTGTATAAGTTTTACGCTtctgtcacttcctgtctcgTTTTCAGCGCTATCGTTTTGCCCGTGGGTTTTCACCAATGGTGTTAGTGTCGCATTTCTCACTCCTCcgtccctccctccttccctccatcGGTGTCGCTCTGCTTTTCCTTTCACTCTTCAGGAAGACGGCCTAGGGAACGAGGGAGGAAACAAAGCATGAGGGAGAGGCACCTTTGCCTTTCCCAAGCCGGTCTTTGTGTGCAGGACAAAGGAGTGGTTATGGATGCGGGACACGGAGGCCCAGAGGCACATGGGAGTCTCGGGATGGCATTGAATCTCTCCTGGCATAAATATCCTCCTCTGGAGAAACACAGTTCCTTGTTGCTTGGATTTATGAAGCACTGGGTTAAATTACTGGGCTGGACATCTAtgttagatttacatttaattcagTTCTCTGTGGAAACGaatggatttgaactcacaaccaggtttcgctgttagctcctaaaaacaaaagaGAGATGAGCAGCAAAGCAAGTCTTCATTCTGATGGAGGGATGTGTCCACGACCTCAAATGCCACAGCCGACCACAGCTTATGGACAACAGCTCTTATTATTAATGGAAGTCCTCTTTATGCTGCTTTTAACCTTTAATCCAGACTGGTGTTGgcttttttcctgcttttgtTAGTAGTATAAAAGGATTACGTGTGTCTATCGATCAgctgatgaataaaaatatacagcatGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578349.1 True 1632 lncRNA 0.41 2 4966634 4971603

Neighbor

gene id symbol gene type direction distance location
LOC113534489 rap2b coding downstream 35914 4928340 ~ 4930720 (-)
LOC113534715 arhgef26,LOC102799329 coding downstream 125600 4785197 ~ 4841034 (-)
LOC113534432 mme,LOC107548962,LOC107695447 coding downstream 289274 4642261 ~ 4677360 (-)
LOC113534774 LOC108263974,LOC108263992,LOC108434102,LOC108437989 coding downstream 331877 4630852 ~ 4634757 (-)
LOC113534721 LOC108264207,LOC108264093,LOC108264205,LOC108264095,LOC108264099,LOC108264096,LOC108264094,LOC108264212,LOC108264097,LOC108264203 coding downstream 363673 4597574 ~ 4602961 (-)
p2ry1 p2ry1,LOC102799884 coding upstream 1405 4973008 ~ 4976264 (-)
LOC113534806 NA coding upstream 113671 5085274 ~ 5107393 (-)
ulk3 ulk3,LOC107665498,LOC107681021 coding upstream 383018 5354621 ~ 5372127 (-)
larp6a larp6,LOC107665376 coding upstream 437964 5409567 ~ 5414923 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding upstream 598792 5570395 ~ 5583415 (-)
G93926 NA non-coding downstream 72560 4893586 ~ 4894074 (-)
G93896 NA non-coding downstream 181503 4783925 ~ 4785131 (-)
G93753 NA non-coding downstream 419929 4546439 ~ 4546705 (-)
LOC117597614 NA non-coding downstream 734803 4231460 ~ 4231831 (-)
G93716 NA non-coding downstream 782641 4183755 ~ 4183993 (-)
G93988 NA non-coding upstream 35822 5007425 ~ 5011433 (-)
G94010 NA non-coding upstream 104537 5076140 ~ 5179801 (-)
G94045 LOC108264453 non-coding upstream 148425 5120028 ~ 5126327 (-)
G94058 NA non-coding upstream 360471 5332074 ~ 5336409 (-)
G94284 NA non-coding upstream 416499 5388102 ~ 5391848 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 746027 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 793040 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 893101 4070800 ~ 4073533 (-)
kcnab1a kcnab1,kcnab1a,LOC108263953,LOC107675612,LOC107566585 other downstream 1417883 3425718 ~ 3548751 (-)
G93047 NA other downstream 2198336 2759612 ~ 2768298 (-)
ss18l2 ss18l2,s18l2 other upstream 668093 5639696 ~ 5642949 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other upstream 742240 5713843 ~ 5786431 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 1225640 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 2174897 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 2466488 7438091 ~ 7694427 (-)

Expression


Co-expression Network