LOC117597596


Basic Information

Item Value
gene id LOC117597596
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 5911768 ~ 5913593 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578356.1
AGGAcatttgctgtcatgtttgtgTATAAGGTGACTGTGGGTCTGTTGGCCTCTGCTGCTGGTCTGTTCTGCAGAGGAGgactcttctttctcttctgccTGTGGGAGAATTGATCGAGAGAGCAAACAGTAAAATCAATCGTGCCATTGGTGACACTGTGCTGATTGAAGGAGACATTGCTGTTCCTACTGGCAATGAGAAAAAGCTGACCCCTGCACCGCCAAGAACTGCAAGTGGCCAAAGTCGGCTGACTGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578356.1 True 258 lncRNA 0.49 3 5911768 5913593

Neighbor

gene id symbol gene type direction distance location
LOC117597570 NA coding downstream 102251 5807422 ~ 5809517 (-)
LOC113534712 NA coding downstream 104586 5805677 ~ 5807182 (-)
LOC113534713 NA coding downstream 115712 5792221 ~ 5796056 (-)
lsm14ab lsm14a coding downstream 253663 5644816 ~ 5658105 (-)
gpib gpi,gpib,LOC107659049,LOC107712583,LOC108431707 coding downstream 328353 5570395 ~ 5583415 (-)
chst8 LOC108264863,LOC108264314 coding upstream 10938 5924531 ~ 5928298 (-)
LOC113534754 LOC108264847 coding upstream 117823 6031416 ~ 6042803 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding upstream 134883 6048476 ~ 6171119 (-)
trnam-cau_19 NA coding upstream 280482 6194075 ~ 6194147 (-)
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding upstream 563359 6476952 ~ 6680208 (-)
G94441 NA non-coding downstream 207977 5703581 ~ 5703791 (-)
G94325 NA non-coding downstream 349362 5560555 ~ 5562406 (-)
G94284 NA non-coding downstream 519920 5388102 ~ 5391848 (-)
G94058 NA non-coding downstream 575359 5332074 ~ 5336409 (-)
G94010 NA non-coding downstream 731967 5076140 ~ 5179801 (-)
G94607 NA non-coding upstream 111767 6025360 ~ 6029235 (-)
G94608 NA non-coding upstream 115716 6029309 ~ 6030675 (-)
G94728 NA non-coding upstream 317263 6230856 ~ 6231165 (-)
G94730 NA non-coding upstream 319412 6233005 ~ 6233239 (-)
G94732 NA non-coding upstream 325088 6238681 ~ 6239748 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 125337 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 268819 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 1691161 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 1738174 4173288 ~ 4173594 (-)
LOC117597611 LOC108264121,LOC108264120,LOC108264117 other downstream 1838235 4070800 ~ 4073533 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other upstream 283650 6197243 ~ 6281530 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 1232907 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 1524498 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 2482219 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 3261062 9174655 ~ 9215815 (-)

Expression


Co-expression Network