trnap-agg


Basic Information

Item Value
gene id trnap-agg
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 6865268 ~ 6865339 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnap-agg
GGCTCGTTGGTCTAGGGGTATGATTCTCGCTTAGGGTGCGAGAGGTCCCGGGTTCAAATCCCGGACGAGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnap-agg True 72 tRNA 0.61 1 6865268 6865339

Neighbor

gene id symbol gene type direction distance location
kirrel3b LOC108264823,LOC108434141,LOC103024239 coding downstream 185060 6476952 ~ 6680208 (-)
trnam-cau_19 NA coding downstream 671121 6194075 ~ 6194147 (-)
gramd1bb gramd1b,gramd1bb,LOC108264679,LOC107717608,LOC107670606,LOC107733299 coding downstream 694149 6048476 ~ 6171119 (-)
LOC113534754 LOC108264847 coding downstream 822465 6031416 ~ 6042803 (-)
chst8 LOC108264863,LOC108264314 coding downstream 936970 5924531 ~ 5928298 (-)
ets1 ets1,LOC106581098,LOC106612966 coding upstream 127797 6993136 ~ 7035230 (-)
LOC113534626 LOC108264086,LOC108264449 coding upstream 224634 7089973 ~ 7092426 (-)
LOC113534708 LOC108264086,LOC108264449 coding upstream 245420 7110759 ~ 7113794 (-)
LOC113534612 LOC108263907 coding upstream 257244 7122583 ~ 7126393 (-)
LOC113534467 LOC108264339,LOC108264337 coding upstream 266258 7131597 ~ 7140900 (-)
G94975 NA non-coding downstream 195661 6664855 ~ 6669607 (-)
G94761 NA non-coding downstream 478984 6385400 ~ 6386284 (-)
G94746 NA non-coding downstream 597478 6263752 ~ 6267790 (-)
G94745 NA non-coding downstream 605123 6259340 ~ 6260145 (-)
G94744 NA non-coding downstream 606236 6258115 ~ 6259032 (-)
G95072 NA non-coding upstream 136309 7001648 ~ 7002634 (-)
G95066 NA non-coding upstream 221172 7086511 ~ 7088041 (-)
G95227 NA non-coding upstream 462149 7327488 ~ 7327703 (-)
G95440 NA non-coding upstream 471026 7336365 ~ 7336566 (-)
G95449 NA non-coding upstream 522393 7387732 ~ 7430763 (-)
clmpb LOC108264733,LOC107733295,LOC108434152,LOC107692491,LOC107670645,LOC107602112,LOC107717607 other downstream 583738 6197243 ~ 6281530 (-)
LOC113534829 kctd15,LOC107668486,LOC107712586,LOC107658979,LOC107099506 other downstream 1078837 5713843 ~ 5786431 (-)
ss18l2 ss18l2,s18l2 other downstream 1222319 5639696 ~ 5642949 (-)
LOC113534736 LOC108264124,LOC108434067,LOC108434089,LOC108434035,LOC108434036,LOC103037408,LOC108434043,LOC108264108,LOC108264111,LOC108264104,LOC108434059 other downstream 2644661 4217018 ~ 4220607 (-)
G93711 LOC101487076 other downstream 2691674 4173288 ~ 4173594 (-)
LOC113534453 LOC108264337,LOC108264339 other upstream 281161 7146500 ~ 7157488 (-)
shank3a shank3,shank3a other upstream 572752 7438091 ~ 7694427 (-)
LOC113534821 LOC108264660,LOC108443050 other upstream 1530473 8395812 ~ 8478337 (-)
cotl1 cotl1,LOC107559813,LOC107722478 other upstream 2309316 9174655 ~ 9215815 (-)
LOC113534661 NA other upstream 2885543 9750882 ~ 9772020 (-)

Expression


Co-expression Network