LOC117597771 (p38a,LOC104939458,LOC100692416,LOC108442382)


Basic Information

Item Value
gene id LOC117597771
gene name p38a,LOC104939458,LOC100692416,LOC108442382
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12937304 ~ 12941456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155563
CtgcctttattttctttaataaacaatgcTTATTTGATTATGTTCTCTACAGTTTGATGTAGGAAATAAAGCAGACAGAAGCAGCCACTCCAGTTAATATCACCTCTGCAGTATATAAATATCTCACACTGGTACAATATTGACATTCATTTCATAATTTCTCAAATGACAGCTCAAAAACACAAGAGGACAAACCCCATTCACATCATGCAGTCacatcctctccatctctcttacAGTCTTGCACACAGTGACAGCTCAGAAGGGTGAACACACCATAAAATATACAGATGATGAAAAAGATTACAAGAATAACCTTGTCACTGGTGCCAATAAAGTCTTCCAAATAATGGCAGAGTCACTCTAGTTTCTCCAAGTTAAACTAAAtggcacacattaaaaaaattttgtcAACAAAGTTTTTGGGGAATTATACAGGGGTCTCCCCTGGATTGCCAAATATCTCTAGCAAAGCTTCTAAATGTAAGTTAATGCACATACAATGAACTGTTCAACAAAACGTGAGAGTGTAGCTACATGCATCACAGATCCCAGTACCTTGTTCTAAAATATAATCCTACTAGCagagaataaaatgtaaatattttatatctaaAATGAAACCTTTATCTTATTTAAATCAGTCAGGGGTCTAGCCAGCTAGTTTTATTCTCAGCAAAAGTTATTCAGGAAATGTCAAATAAGACATTGGTGGCAGGAGTATTTTTTCTATTTAGGTAATAACACTATAAATAGCAATAGAAACACTATttcattgaaaaaaatattattcaagcAGATTTTGGTCATATCAATGATACCAAAGTTGTGTTGAGTTTAGATGAAATTCCAACTTAGAAATAAGAACCATACCTTTTCCAGTGTTAATAGATTTTGTAATGCTCAATCCACTGAATTGTAAAGTTGCTGGGTTGGGACATAGTGTAATAAGCATAAAGCTGTGTTGCCAGGTGAGATGTTTTTATGCAAGTGTGTGAgcttaaaaatgttaatatgtcTGTTCATTTGCCTGACAAATGAATGGAAAAATGGCAGGGGGTCAGCACAAACGCAACTCTACTCTACTAGAGGTTCCACTTAAACCTCTCATGAAATGTGTCCCTTTTTCTGTCTTAATATGTTTTGCTCCCTAATTCAGTAGatgccatttttttaatatacaaaacatttttaaaaagactagaacaaagaaaataaagtggCAGGCACTTAAAAATCATACTGTCGGTCTGGTTAGAGAACTGCAAAACATTACAGTGCTAACAAACAAAGTTGAAAGACTGCTGAAGTTCCCGTCCTGTACGGTTCTCACGATTCCATTTCATCCATATCAAATGCAGGTGGCTTGAAACTGATGACTTCCTCATAGGTCAAACCTGTGCAGGGATGAAAAGTGAAGTGTTACGGCCTACGCTGCGTACATCACTGCAATCTGCAGCCATGACTCACGTTTCCACTCTTCAATCTCTAGTTCCCGACTCTCAAAGCTCTGGTCATAGGGCTCTGCTTCTGGTTCATCATCTGGGTCATGATACTGGGCAAAATATGGATGAGCCAAAGCTTCAGCTGCAGTTATTCGCTTATCTGTATCCAAAACCAGCATCTTCTCGAGGAGGTCCACAGCCAGTGGATTGGCCCCAATAAATACATCAGCAAAATTCCTTTTAGGCATCTGTGGCAGGGAATTAATGTAATTCCTGGCCTGCAAAAAGAAAGGGTTTAACTGTAATTTAAGGGTAAGCTTTAGGGACATAAATCGTAGGATTTATGCAAAGATGATCCTGTTTAAGCTATTTATACTTGCAGTCAGACTTTCTAAATAGACCAGATTAGGGCACAAAAAGCTGTATTAAATGTAAGAGAATCTGTAAACAGAGGTGAAAAAAGCAAGGAAAAGACTAGGACGCCTCATTTCAGGGCCAACTTGCTTCCAAACAATTGTCTCATGATTTATAGCATCTGGTTTATTTATGACTTTACAGGATGAAATTTATGATCTCAGACAAAATGATTTGAATGTATGTTAAAATGTGGTAGCATTTTCAACTCAATCTCCATACACCCTCTTAAGGTGTATGACTGGTTGCttgtatgattattttt
>XR_004578521.1
AGGTGGCTTGAAACTGATGACTTCCTCATAGGTCAAACCTGTGCAGGGATGAAAAGTGAAGTGTTACGGCCTACGCTGCGTACATCACTGCAATCTGCAGCCATGACTCACGTTTCCACTCTTCAATCTCTAGTTCCCGACTCTCAAAGCTCTGGTCATAGGGCTCTGCTTCTGGTTCATCATCTGGGTCATGATACTGGGCAAAATATGGATGAGCCAAAGCTTCAGCTGCAGTTATTCGCTTATCTGTATCCAAAACCAGCATCTTCTCGAGGAGGTCCACAGGCTGTGACAGTACAGAAACTCCAATCAACAACCAGTGTATAGCAACGACGAAAAGTAGCACCTGAAGTAAATGGCTTGTGTTGTGAGGAGAGAAGAATggaaagagaagagacagagaaagcaaCACAGAGGTTTGACATGCACATATGAGACACAATGCTGTAAAGAACAACTCTTTAGATTTGAAACTGTGCATTATAGTCATTCCCAGAGAAAACACAGCCGG

Function

symbol description
p38a Enables MAP kinase activity. Involved in several processes, including defense response to other organism; paracrine signaling; and positive regulation of cell size. Located in nucleus. Is expressed in adult head; embryonic midgut chamber; embryonic primordium of adult hindgut precursor; embryonic/larval midgut; and organism. Orthologous to human MAPK11 (mitogen-activated protein kinase 11).

NR:

description
mitogen activated protein kinase p38a

GO:

id name namespace
GO:0038066 p38MAPK cascade biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0006468 protein phosphorylation biological_process
GO:0045663 positive regulation of myoblast differentiation biological_process
GO:0010831 positive regulation of myotube differentiation biological_process
GO:1901741 positive regulation of myoblast fusion biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155563 True 2124 lncRNA 0.37 3 12937304 12940631
XR_004578521.1 False 511 lncRNA 0.45 3 12938663 12941456

Neighbor

gene id symbol gene type direction distance location
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding upstream 16118 12916438 ~ 12921186 (+)
dclre1b dclre1b coding upstream 138937 12792216 ~ 12798367 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 154147 12775926 ~ 12783157 (+)
LOC113531715 LOC108265567,LOC108414659 coding upstream 275159 12659028 ~ 12662145 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding upstream 282621 12651225 ~ 12654683 (+)
c8h1orf194 c5h1orf194 coding downstream 36571 12978027 ~ 12979366 (+)
inavaa LOC108264883 coding downstream 43971 12985427 ~ 12994779 (+)
LOC113534124 NA coding downstream 113994 13055450 ~ 13061438 (+)
trnav-cac_9 NA coding downstream 120480 13061936 ~ 13062008 (+)
trnaf-gaa_25 NA coding downstream 122594 13064050 ~ 13064122 (+)
LOC117597782 NA non-coding upstream 127566 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 207782 12712625 ~ 12729522 (+)
G131606 NA non-coding upstream 224819 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding upstream 235803 12700712 ~ 12701501 (+)
LOC117597859 NA non-coding upstream 404046 12519894 ~ 12533258 (+)
G131721 NA non-coding downstream 61939 13003395 ~ 13006090 (+)
G131715 LOC108265908,LOC108442391 non-coding downstream 80760 13022216 ~ 13023846 (+)
G131930 NA non-coding downstream 332679 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 373987 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 375842 13317298 ~ 13317506 (+)
rbm15 rbm15,LOC107731203 other upstream 332599 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 707303 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 941452 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1223272 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1240513 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 763710 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 948948 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1008481 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1380716 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1998845 14940301 ~ 14982884 (+)

Expression


Co-expression Network