G131715 (LOC108265908,LOC108442391)


Basic Information

Item Value
gene id G131715
gene name LOC108265908,LOC108442391
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13022216 ~ 13023846 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155597
CTTGGGTCTAAAACATCTACGATGAGGTCTGTGCCCAGGTGGTAGCTCATGGCTAAAGATGCACTCTGATGCAAAGGGGCAGCATCCATGACGCATGAAGAaattgcactttatcctgctcttttctttaaatgaagcaatcaatGCTTCCTTTGGCTCTCCCTCACAAACCCAGTACTTACTGGGAATGTAAAAAGAGGACTTCACTCTACACTGTGGACAGGCTTGATGACCTCTTCCTGAAAGTCTTTGGTCTTTCGCCAGGTCATGATGCAGCCAAGACAGAAGGCATGACTGCAGTTGGGCAGGATTCCAAAGCGCCTTTCTCGCGCTGTGCTTTTTTCATAAACCTTGTCCATGCAGATACCACAGAAGACATCTTTGCTTTGATTGTAGGCCTCAGATTGTCCCTGGTCAACTGATGCTGTTGCACCAGTCTCCAGCCTACCACTCTCCTGCAGACGGACTCCCTGAAGACAGTAAAGCCTTAGCCAATATGCACAGCAAGCAGTGTTGCCAACACTTCAGAGGGAAATAGCCAATGCATGCTCAAAGTCCATCAAAT

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase makorin-1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155597 True 565 lncRNA 0.47 3 13022216 13023846

Neighbor

gene id symbol gene type direction distance location
inavaa LOC108264883 coding upstream 27437 12985427 ~ 12994779 (+)
c8h1orf194 c5h1orf194 coding upstream 42850 12978027 ~ 12979366 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding upstream 101030 12916438 ~ 12921186 (+)
dclre1b dclre1b coding upstream 223849 12792216 ~ 12798367 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 239059 12775926 ~ 12783157 (+)
LOC113534124 NA coding downstream 31604 13055450 ~ 13061438 (+)
trnav-cac_9 NA coding downstream 38090 13061936 ~ 13062008 (+)
trnaf-gaa_25 NA coding downstream 40204 13064050 ~ 13064122 (+)
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding downstream 89860 13113706 ~ 13134629 (+)
wasb was coding downstream 112843 13136689 ~ 13145207 (+)
G131721 NA non-coding upstream 16126 13003395 ~ 13006090 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 80760 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 212478 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 292694 12712625 ~ 12729522 (+)
G131606 NA non-coding upstream 309731 12690167 ~ 12712485 (+)
G131930 NA non-coding downstream 250289 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 291597 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 293452 13317298 ~ 13317506 (+)
G131962 NA non-coding downstream 301658 13325504 ~ 13325713 (+)
G131968 NA non-coding downstream 342034 13365880 ~ 13368176 (+)
rbm15 rbm15,LOC107731203 other upstream 417511 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 792215 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1026364 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1308184 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1325425 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 681320 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 866558 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 926091 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1298326 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1916455 14940301 ~ 14982884 (+)

Expression


Co-expression Network