G131987


Basic Information

Item Value
gene id G131987
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13433917 ~ 13435294 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU155938
CGTCACCTTGTCCCAATGTAATCCTCTTTGCGCCGAGCCTTATCATCAGCAGAGCAGGGAGAGCGCACAAGGAAGCGCTAATCTCTGCAACACTGGACCTGAGACACAAACGACAGACCTGAACGCTGCGGcagggagagacacagagaaagacagagagacagagagagatcacGAAGGGaataagctgcattttgtgCCTGTTCGCTTGACATGAAGTGCGCAAGTCCAGCGGGATGCAGGCAGAACAGGCAGGTTGAGTGAAAAGAGCCTTGGCGAAGGAACCTTTGTTTACGGAGATGCTTGAGGACCGACTCGGTGCCGTGACGCTTTGCTGATTTTTGCTGGGATAAAATGTTTGGGGAGGGGCTTtgaagggttttattttttatttgaggaATGGAAGGATGTAGCTACAGGGGTGCTGAGAAATGATCCGTTTTGTTTACCACCCTGATGAGCAGAAGGATGCAGGCTACAGTCACAGAATTATAGCAAGCATTTTTGTAGGGTTTAGGGCTCAGATGCGATGGATAGCGCGCCCTTGATTTCTCTAGATGGtaattgtgtatttatatattagttGCGATTGGAGGCCTGTAGAGCACATCGGTAGATTGGTATGTCGGAGATTTGAGGTTGTGCAATAGAGATTGTCAGGGTGTCTATAAAAGCCTGCTTGAGTGAGGGACAATAGCGGTGGCACCTGGATGCGGGCTGCACAGTGCAGTGTTGCAGTGCATTGacgggcagtgagcacaggccGCCGGCCTGCTTTCAGTGCGCCTGCATGCGCTCTGCATTGGATACGAACGAGCAGGAGGGATTTTAAATCGTCAGCGATTTAATGCGGCAGATTGCAGCTTCTCCTGTCGACCCCGGGCTCCAGCTCTGCGTGTTCACGGCGGACCTTGATTTAATATCCGATACAATTAAGGCACGCGGTGAATGCCAAGAGAGGCTCCTCGAAAACTGCGGGATTCATCTCCGGGATGTGCGGGACAGCAAAGAGCGAAGGCAACGACATAACGTGTAGAATTGTACAAGCTcaagagcagtgtgtgtgtgtgtgtgtgtgtgtgtgaggcacaTGCATGATTGCATGATAGAAATAGCAACTTGGAGAGCTAGAACCCCTCCTCCATTTGAAAGCCTTGCTCTTTAAAGTCTGCTCGCATTACAGTAAACGTGTCATAGAGCATCAGATGGCTAATGAGCATCAGATGGTTGAGCTTTAGCCTATAGCTCTGTGTTAAATGGCCTGAGATTAGGTTTACAGTAAATGGCTGGATAATGACGGGCACGCGCACATTAGAaggctactttaaaaaaaaaaaaaaaaaaaaggaacgtGAATACATATACGTATATAGGCGAA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF19B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU155938 True 1378 lncRNA 0.48 1 13433917 13435294

Neighbor

gene id symbol gene type direction distance location
tpd52l2a tpd52l2 coding upstream 47532 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 64298 13369548 ~ 13369619 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding upstream 81314 13309890 ~ 13352603 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding upstream 208598 13214466 ~ 13225319 (+)
wasb was coding upstream 288710 13136689 ~ 13145207 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding downstream 28837 13464131 ~ 13489999 (+)
emilin3a LOC108265066 coding downstream 88427 13523721 ~ 13541674 (+)
magixa LOC108265805,LOC108437579 coding downstream 181310 13616604 ~ 13688929 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 387804 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 403044 13838338 ~ 13868120 (+)
G131980 NA non-coding upstream 11703 13420705 ~ 13422214 (+)
G131972 NA non-coding upstream 33637 13392525 ~ 13400280 (+)
G131968 NA non-coding upstream 65741 13365880 ~ 13368176 (+)
G131962 NA non-coding upstream 108204 13325504 ~ 13325713 (+)
G131956 NA non-coding upstream 116411 13317298 ~ 13317506 (+)
G131948 NA non-coding downstream 207 13435501 ~ 13436958 (+)
G131947 NA non-coding downstream 2628 13437922 ~ 13439730 (+)
G132081 NA non-coding downstream 65095 13500389 ~ 13500683 (+)
G132115 NA non-coding downstream 135098 13570392 ~ 13570972 (+)
G132139 NA non-coding downstream 356568 13791862 ~ 13792709 (+)
rbm15 rbm15,LOC107731203 other upstream 829212 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1203916 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1438065 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1719885 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1737126 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 269872 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 455110 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 514643 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 886878 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1505007 14940301 ~ 14982884 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036425 NA non-coding NC_007119.7 CM002892.2 23121513 ~ 23123787 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_04901365_04901652 NA coding CI01000001 null 4901275 ~ 4902567 (+)
grasscarp (Ctenopharyngodon idella) G82045 NA non-coding CI01000013 null 7339729 ~ 7340751 (+)
rainbow trout (Oncorhynchus mykiss) G2097868 NA non-coding NC_048592.1 CM023246.2 5071567 ~ 5073424 (-)
tiger barb (Puntius tetrazona) G63065 NA non-coding NC_056706.1 CM032075.1 11523022 ~ 11523638 (-)