G132115


Basic Information

Item Value
gene id G132115
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13570392 ~ 13570972 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156088
CTCATCCTCTTCTTGTTCTTCCTCCaggtcctcctcttcctcctcaagGTCTGCATTCATGGCCAGGCGAATCTCTGGCCCAAGATCCTGCAGGGTGCGCAGACCCGCCTGACACAGCTGTAGAGCCGATGGCTGTTTAGGGTCCGGGTCTCCCAGACCCACTTTCTCCTTCCTCTTACGGAACTTCCTGAAGTAGTCCTGAATTAGGAATGTGGCGTAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156088 True 223 lncRNA 0.55 2 13570392 13570972

Neighbor

gene id symbol gene type direction distance location
emilin3a LOC108265066 coding upstream 28718 13523721 ~ 13541674 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding upstream 80393 13464131 ~ 13489999 (+)
tpd52l2a tpd52l2 coding upstream 184007 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 200773 13369548 ~ 13369619 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding upstream 217789 13309890 ~ 13352603 (+)
magixa LOC108265805,LOC108437579 coding downstream 45632 13616604 ~ 13688929 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 252126 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 267366 13838338 ~ 13868120 (+)
apex2 apex2 coding downstream 302574 13873546 ~ 13877960 (+)
lrif1 lrif1 coding downstream 308139 13879111 ~ 13885667 (+)
G132081 NA non-coding upstream 69709 13500389 ~ 13500683 (+)
G131947 NA non-coding upstream 130662 13437922 ~ 13439730 (+)
G131948 NA non-coding upstream 133434 13435501 ~ 13436958 (+)
G131987 NA non-coding upstream 135098 13433917 ~ 13435294 (+)
G131980 NA non-coding upstream 148178 13420705 ~ 13422214 (+)
G132139 NA non-coding downstream 220890 13791862 ~ 13792709 (+)
G132136 NA non-coding downstream 222184 13793156 ~ 13794305 (+)
G132138 pdzd4,LOC108437581 non-coding downstream 223610 13794582 ~ 13799616 (+)
G132357 NA non-coding downstream 439531 14010503 ~ 14013621 (+)
G132391 NA non-coding downstream 514680 14085652 ~ 14087881 (+)
rbm15 rbm15,LOC107731203 other upstream 965687 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1340391 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1574540 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1856360 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1873601 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 134194 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 319432 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 378965 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 751200 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1369329 14940301 ~ 14982884 (+)

Expression


Co-expression Network