G132136


Basic Information

Item Value
gene id G132136
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13793156 ~ 13794305 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156118
tcttcacaccaaatattgactttgtttcatttattactgtttactgctctttatagtattttttaaatgtagaaatatttaatttcattatttttgaaggcatctttgctctacagcttATTTGACTTATTCGAAGTTTATTTGactttgtatattttttgtatttatatattttctttggGCTTAAAGGCTTATACGTGTTTTTAAGGGAGCGACCAAGACACAAGTGAGGAACTTCCCAGGCATTATCACTAAACAGGTCATTTcaatgaattgaaaaaaaaacaagtaaagaaCCTGTTTAGATGAAGTCTGTATAAGGATTTTTCCTGTGtatctgttgattttttttattttatttatttttaatttagcggcaactctgaatatggctcTAGAAgtttttgaaaaacatttaacCAGCAAACCTACCTTCAtatgatttttaatgtttattttctcataGTTTATTACGTATCACTGTGTGGAATCTAACATTAGACTGTCATCTAATGTGGGATACGATACAGTTAGTCATTACAGGGCTGTTTAGCAAAGGACGTACGTTCAACAAGGTGTGAACTATGTGGCTGTAGGATGCCGTCTAAATTTTGAGCACAACTCTGAGCATTCTCCCATCACTCTTGATCCTCTTTTGAGCTAGTTTGTTTCACATTTGTGCTTGCATTAAGTGTCATGAGACCTGAAGGACAACAGGttcaaaaacaaatcacagCCGACTAACAGACCTATTAAAGTAGATTCAGTAGTTTTGGAAAGCGTCTTTACTCCTGATTGGATATGCTGATGTCTTGCGCCAGTGTGCCAATGTGTTGCATGTTCTACTGCACTTAACTGAATGACGCTGTATAAAAACTTGAATGTACATATAAGCTAATATAAAtactctgtatttactctggaaTGGGCTGTGTTATAATGTCTATAACTGGCTGGGAGCAGGGAGATGAGCTATTGTTTACACTTTAGGGACTGGGGaacaaaatgtaactgtaaatgtatcAGTATGTGTTTCAGAGcagtaattatatttaaagaGATGACATTGTAtgaagttttatttgtatatatgtatgacGTTTCCATCACAACCTAATTCAGAGAAATTCTATGTGATTATTTATTGCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156118 True 1150 lncRNA 0.34 1 13793156 13794305

Neighbor

gene id symbol gene type direction distance location
magixa LOC108265805,LOC108437579 coding upstream 104227 13616604 ~ 13688929 (+)
emilin3a LOC108265066 coding upstream 251482 13523721 ~ 13541674 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding upstream 303157 13464131 ~ 13489999 (+)
tpd52l2a tpd52l2 coding upstream 406771 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 423537 13369548 ~ 13369619 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 28793 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 44033 13838338 ~ 13868120 (+)
apex2 apex2 coding downstream 79241 13873546 ~ 13877960 (+)
lrif1 lrif1 coding downstream 84806 13879111 ~ 13885667 (+)
ercc6l2 ercc6l2,LOC107689281 coding downstream 360553 14154858 ~ 14171793 (+)
G132139 NA non-coding upstream 447 13791862 ~ 13792709 (+)
G132115 NA non-coding upstream 222184 13570392 ~ 13570972 (+)
G132081 NA non-coding upstream 292473 13500389 ~ 13500683 (+)
G131947 NA non-coding upstream 353426 13437922 ~ 13439730 (+)
G131948 NA non-coding upstream 356198 13435501 ~ 13436958 (+)
G132138 pdzd4,LOC108437581 non-coding downstream 277 13794582 ~ 13799616 (+)
G132357 NA non-coding downstream 216198 14010503 ~ 14013621 (+)
G132391 NA non-coding downstream 291347 14085652 ~ 14087881 (+)
G132361 NA non-coding downstream 322670 14116975 ~ 14120415 (+)
G132405 LOC108265425 non-coding downstream 438723 14233028 ~ 14234254 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 1839 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1188451 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1563155 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1797304 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 2079124 11705547 ~ 11714032 (+)
dock8 dock8 other downstream 96099 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 155632 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 527867 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1145996 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 1185528 14979833 ~ 14979904 (+)

Expression


Co-expression Network