G132138 (pdzd4,LOC108437581)


Basic Information

Item Value
gene id G132138
gene name pdzd4,LOC108437581
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13794582 ~ 13799616 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156120
TGACCATTTAAGATCGAATGCATGTTACAGCTTGTGTAAATAGGACCACTGATATGAATCAACAGGTACCAACTGCGCTAACAATATAATAGAAATCTACTTGTAACTAACACACCGACAAATCAATAGAAACTGAAGTAAGAAACACTGATCACATAGATACTATACTGAGCAATGGATATACATCAATATAATCCATAGAATATTTCTGTTAATGTGTGCTATACTTCTCAttaaaatcatgcaaaaatgTTTCACAGTCCAAAAGTCAGAAAAGTCACTCTGTACGCATAGAGTGGATAGGTTGAGAGTGGTCAGAATAATAAGCAAAGCTGTTGTCCTGTTTGTTCAcacaattatttacaaattaacacCTAACTCTTGCTGTGGTTCATCGATCTGTGGGGCATCACTCAGCTGGATAAATACAGATTTGGCCTTTTTTTGGTCTTGTGCTTTAGCTGTTGCAGCTGGTCATGTCTGCTGTAGGTATTAGACAACATGGCTGTACACCCATTCTCAGCACCTTCCATTTAGAGCTGCACAATATACACTcattggccactttaataggaacacctgcacgattatgcagttatccaatcagccagttaggaggcagcagcacagtgcattaaatcatgcagatacaggtcatgtgcttcagttaatgtttacaccaaacatcagaatgggggaaaaaaatttgatttcaTTGACTCAAATAACctctctttacaaccgtggtgagcagaaaagcatctcagaatgcacaggaCATCGGACTTTGAGGCAGAtgggatacaacagcagaagaccacgctGAGTTTCAGTCCTGTcagccaatacaacaatgtgAGTTTACAGTGGACACTGGCTCATCGAaacaggacagttgaagatggttgcctggtcttttttcaaTCTCCAAATGTTcagtttctgctgttgtaacccatctgcctcaagattcagtgtgctgagatgcttttctgctcagtgtggtcgtaaagagtgtttatttgtctCACCTGTCAGCTTTTGGAAGTCTGGCCATTCTGACCATCCatctgacctctttcatcaacaaggcatttccacccacagaacctCTGCTTAGGAGatgtgtttggggtttttttgtttgtttgtttgtttgtttgttttttttttgcaccatcctgtgtaaactctagagactgatgtgtgggaaaatcccagaagatcagcagtttctgaaatactcagaccaggcCATAGTCagtgtcactgagatcacattttttccactttctcaCAATTGCCGTGAACATTAAGCTCTTGTCCTGTATTTGCACAGTATTTTATGCAAATACAGTGCATTTTATGCACTGCTACTACActattggctgattgaataattgcaagAATGAGCAGTTGTAccggtgttcctaataaagtggccagtgagtgtatcaCTCACAGTGTATCGCATTGTTAATATTATCTTTGCCTTTTCTATACTGATATAACAGATGATATCACTGATATCATTGAAATTATCCCTATAATTCCTATTTTATTTGTCTGCTGTGATTATCTTAACCAATATTACCATTCTGTTTGAGTGTGAAGAATCACGGCAACCAATATCATAAATAGTTAATAATTCACACCAGTGTTTCAAGGCTTTAACTATGTCACATTACGGGTTCATCAGTGTTTTTAACATATTGCAAGGTATACCACAGTCACAATATGTAGCAATATAATCTTGTGTATATAATCATATTGTGTAACCTTActctgaatgaacaaaaaaggCGTTGCTCCGTTGTGTCCATGTTACGCTGGTCTTGGTGTTTTCAAGCACATTCACCTTGTCCTAGTTTATAGGGTATAGGCTGTATTTTTTCCAACATGCACCATGCCGATTTAGCACCATGTTGTCTCAGCAACCTCACTGGTTCTCAAATGTAGTCTCTGGCACGAACTGGTatttacttccttttttttctgctatggGTTTTGAGGGTAGTTAAATAACCATTACAGGATTCTATAGTTACAGTATTAAGGAGCTCCaatttgtaattgtttgtaTAATGACACGAAACATGGAGTGAATTTAGATCTTTCTTGCTGTGTGCTTTTCTGTTGTAACTTGGCATTCTCTTGATGGAAACCACAGATATTTGTCAAAACAACAGTCTAGTTACAGAATTTACTTTGTCTTAACAGTTTACGTATGAGGGTATGTAATAGGTAGAATACACACAGGTACTGGTTCTGTGCCTGGGTATTCATTGTGCTGTCATAAAATTTGTGCCGGAGTAACTTTGCCATCCAAAGGTTTGCAAAGTTTGAAAAAGTTATTTTAGAAGCACCTGATGCCATCTTTAGCAGACCAGTGTGCCTAGATTCCAGATTCCCTCATACCATTAAATATGATATGACTAAAATAAGAACCTAATAAACGAATTTTTAGTTGCTACAAGCATTTGTTATAATTTTAAGTTCTCATGGGTAATAAAATTGGCTAAGCAGTTTTCCAGCGTcactatatatgtgtgtagaCGCTACTACATGTTTTGTCACTTTGCAGTTTATTTTGAGGTTGGAGTTGATGCTTAGTGAAATTAGCTTAGAAAGTAGCACCAAGACAGCTCCAGTTAAGACATGCTGTATCATCTGTAACATGCTTAAATAAAGCATATTTTGATAAATGTTTAAGGTGTTGCTGAGGTCTAatatttcctgtgtttttgGTAGTTTCATAAAAGACATGATCCAGACTATTGGCTAAGCATATTCTTAGTCTAAAGGAAGCAAAACATAAGGCTTTACGTTTGATATTATGtaagtaattaaataagtaaaatagcCAGCTAGCTAGATGTTAAAACCAGAGCATCTACATGTTAGGAAAATAAGCACATTTACCCCAAATCAAGGCTTGGTTGAAATCAACACTGGCAGAGCACCAGAGATGTAGTCTAAAAATTGTGCTTGTTACTTTTATGCTGCTTTTATGTAATGGTGATGTGCTACAGAGAATTTTGTGAGATTGTTCAAGCTTTTTCTGTGCTTTTCTCTTAGACAGTAGTGACAGACAGAAGGGGGTTGTAGACTCTTGTCCCATCTGGAGAGCGAGAACCATGAGCCAGGAGCTCTTGGATGGTGATCCAATTGTCCAAGATGCGACGGTTGCGCTTCTTTGAACTCTTCTTTTGGCTTATCTCTAGAATGGAGGTAGCGGCCTGACCTGACTCCTGTTGGCCATCCTTTCCTGGGTCTTGGCCTCGATTACGGAGATAATCTAGTCGACATTGCATCATAAACTCACGTCGTCGACGTTGCTCGCGAGCCCTCAACAACTGTTGCTTTCGCTCCTCTTTGCTCCAGTACCGCCCCATTTTCATTTCACTTacagcatcatcatcagtgGTCATGCCACTACGCTCCTCACAGATCTTCATGGCACGGGCCTTCAGTAGGCGATCACGGACAGGTCGTTTTACTACATAACGTGTGCCATCACTACGGATCTTCACCTTCCACTCCATGCGTGGTGAGGCAGGTGGAAGTGGCAGAGGCAAATCCAAGGAGTGTTTTACTGGGCTGGTGTGAAGCATGGGGCTAAGAGTGCTGTTTGCTAAACTCATAGGGCTTGCCCGGCCACTACTGCCAACTGGAGCCTCACTCTCCCCTTCCACAGTTCTATCCATAGTGCTCTCTGTGAATGAGGAGCCTAGCTGCATGCAGCTCTGGTAGCGCTCAGGCTTAGGTCGGTTAGAGTGATGTCGTCGGGTAAAGTAAGGACTAGATTCAGCACTACGGCCACCAGTTCTTTCATGAATGCTGTTGGCTCTCGAGCTCCTGCCCTGTGTGTCACCATCCGCTAATGAACGAGTGGTCCCCTCCCGAGACAGAGAGTGGAACTTCTGGTTGATATTGGTGTTCATGTGGAACTTCTTGTAGCTATTGGGTGAATAACTGAGTGTGCCACGACCCCTCTCACTCCACAACAGGAGAGAGGTGATCACTCACCAAAGGTGTGCTCCTGCAGCTTTCTCCTCCAGTGTTGTAAGCACTGCTGGTGTCCTTGTCTGATCGCTCTCTCTCAGGGAGTTCTTTGATATCTGACAGCTCATGGTGTGAGGAGCCCTGTAGGTCAGTAGACCCCCTTGCTGAAGCCTCCTCCTCCAGCAGCCATGCCTTCAGGCAGCGCTCTCGTAGCTGCTGCATCTTCTGTGCACGAAGAATGTTCCGACACTTGAATTCAAGGTGCCGTAGCTCCTCCTCCAAGAGTGCCATCTCATGTGGAGTCAGGCTCTCATTAGAGTTTTCATCCAAAGATACCTCTTTgtcttcttcctcctcatcctccccTTCTCCTTCcctcttccttctttcctcAGCGCTTTTCCCTGCATTGCCATTCTTCATATTTCTTTCATAACGACATTTGATCTCTAGCAACTCTCGGTACCTCTCACACTCCTCTTCAGTCAGGCCGGGCATCATCATGGCACTCACTGGATCATGGATGTATCCTCCCCCTGCGCCACCACAATCCAGAGAGTCTGTGCTGAAGTGGAGTTCTCTGATATGGAGTAATGGTGATGGAGTATCCCCCCCACCTCCACTGCCCCTGCCAGGCCTGAACTTGCGGAGGCTGTGTGGTGTATTAGTGGTGTTGGTATTGGAGGCACTGGTCTGCTCGTCGCCAAGGAGTATATCATGCTCGGATGATTCCTCATTCTTGGTGCTCTCATCTGTGCGGCCCACGCCACTGTCCAGCTCCTGGCTGTTATTGAGGGTGGTCAGGCTTAGCAAGGGTGTTTCGCTGTGTAGTGGGACCTCATGAATGCCCATCTGGGCTCTTTGCTGCCGATGATGGTATAGATTGGATAAGTGCGAGCTGTTTAGAGTGTCCACACTCATGCCTACTGGTAACTCGAAATCCAGGTCCTCAGGATCCATTTGAGTCTCCATCT

Function

symbol description
pdzd4 Is expressed in central nervous system; neural tube; and neurons. Orthologous to human PDZD4 (PDZ domain containing 4).

NR:

description
PREDICTED: PDZ domain-containing protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156120 True 4979 lncRNA 0.43 2 13794582 13799616

Neighbor

gene id symbol gene type direction distance location
magixa LOC108265805,LOC108437579 coding upstream 105653 13616604 ~ 13688929 (+)
emilin3a LOC108265066 coding upstream 252908 13523721 ~ 13541674 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding upstream 304583 13464131 ~ 13489999 (+)
tpd52l2a tpd52l2 coding upstream 408197 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 424963 13369548 ~ 13369619 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 23482 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 38722 13838338 ~ 13868120 (+)
apex2 apex2 coding downstream 73930 13873546 ~ 13877960 (+)
lrif1 lrif1 coding downstream 79495 13879111 ~ 13885667 (+)
ercc6l2 ercc6l2,LOC107689281 coding downstream 355242 14154858 ~ 14171793 (+)
G132136 NA non-coding upstream 277 13793156 ~ 13794305 (+)
G132139 NA non-coding upstream 1873 13791862 ~ 13792709 (+)
G132115 NA non-coding upstream 223610 13570392 ~ 13570972 (+)
G132081 NA non-coding upstream 293899 13500389 ~ 13500683 (+)
G131947 NA non-coding upstream 354852 13437922 ~ 13439730 (+)
G132357 NA non-coding downstream 210887 14010503 ~ 14013621 (+)
G132391 NA non-coding downstream 286036 14085652 ~ 14087881 (+)
G132361 NA non-coding downstream 317359 14116975 ~ 14120415 (+)
G132405 LOC108265425 non-coding downstream 433412 14233028 ~ 14234254 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding downstream 445960 14245576 ~ 14246134 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 3265 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1189877 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1564581 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1798730 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 2080550 11705547 ~ 11714032 (+)
dock8 dock8 other downstream 90788 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 150321 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 522556 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1140685 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 1180217 14979833 ~ 14979904 (+)

Expression


Co-expression Network