G132139


Basic Information

Item Value
gene id G132139
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13791862 ~ 13792709 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156121
ATGATATGATTCAAGTGTGTTTTCcgttattaatattatgatgTCAAATATTACCGATATTATCCTTGATATTTTGATGTAACACTTACTACTAATATGGATATTGTTTCTGTGCTGGTTTGTTTTCTATTAGCCTTTTTTCAGTCTAACGCAGTGGTATTTCATGTGTACAAACGGAACTTAACTGGGCTACCTATTTCAGGAACTAGTTTTGCTTGGAAAAAAATTCGGTCTTTTACACCAAACCCATTGCCAGAAGCCATACACTTGTACTTAAGCCAGTCACTCTTTTAAAGAATGTGAATTTACATCAAGTTACATATCTTTGCCCTTTTGTTTATATATGAAAAGCATGCTAATATGATTGGTGCATCTGTGCACACCAGCTAATACATTTCGCACTTGGTTGTCAGTGCATCTATTTGTATGCTGCTTTTACATTTCTGTAGTGTTTGCTCTAGGTGCAAAACAAGAGCTTTTAGTTTGTGCGCACAAAGACTCAAGGCCTACAAGTGCAGTGCCTTGTTAGCAGATCATCTCCCGTCTCCAGCACCCcaatatatgcacacacacacacacacacaccaaacacatccccacaaacacactcaccaaacacacacaacaggtaCACCTCCCCATTCCCCTCTGGCTTTCTGTCACTATTTCAATacagggccatattcagagtttaGTTAGTGTGGTAAGGAGTTAATACAGAAATTGAGCACAGCAGTATTCAGACTTCAGAATCATCTAATTATCAAATTATCAGAGTTTGCATGACTCAGGACAGTTCTTTTTCCCTGGAGGGATTTCACACACCAAAATATGGGATGCAAAATTAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006813 potassium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156121 True 848 lncRNA 0.38 1 13791862 13792709

Neighbor

gene id symbol gene type direction distance location
magixa LOC108265805,LOC108437579 coding upstream 102933 13616604 ~ 13688929 (+)
emilin3a LOC108265066 coding upstream 250188 13523721 ~ 13541674 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding upstream 301863 13464131 ~ 13489999 (+)
tpd52l2a tpd52l2 coding upstream 405477 13372492 ~ 13386385 (+)
trnae-cuc_18 NA coding upstream 422243 13369548 ~ 13369619 (+)
porcnl LOC108265978,LOC108437582,LOC107549961,LOC107668005,LOC107731263 coding downstream 30389 13823098 ~ 13833297 (+)
csde1 csde1 coding downstream 45629 13838338 ~ 13868120 (+)
apex2 apex2 coding downstream 80837 13873546 ~ 13877960 (+)
lrif1 lrif1 coding downstream 86402 13879111 ~ 13885667 (+)
ercc6l2 ercc6l2,LOC107689281 coding downstream 362149 14154858 ~ 14171793 (+)
G132115 NA non-coding upstream 220890 13570392 ~ 13570972 (+)
G132081 NA non-coding upstream 291179 13500389 ~ 13500683 (+)
G131947 NA non-coding upstream 352132 13437922 ~ 13439730 (+)
G131948 NA non-coding upstream 354904 13435501 ~ 13436958 (+)
G131987 NA non-coding upstream 356568 13433917 ~ 13435294 (+)
G132136 NA non-coding downstream 447 13793156 ~ 13794305 (+)
G132138 pdzd4,LOC108437581 non-coding downstream 1873 13794582 ~ 13799616 (+)
G132357 NA non-coding downstream 217794 14010503 ~ 14013621 (+)
G132391 NA non-coding downstream 292943 14085652 ~ 14087881 (+)
G132361 NA non-coding downstream 324266 14116975 ~ 14120415 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 545 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1187157 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 1561861 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1796010 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 2077830 11705547 ~ 11714032 (+)
dock8 dock8 other downstream 97695 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 157228 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 529463 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1147592 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 1187124 14979833 ~ 14979904 (+)

Expression


Co-expression Network