G132405 (LOC108265425)


Basic Information

Item Value
gene id G132405
gene name LOC108265425
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14233028 ~ 14234254 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156430
GTAGATTTTAGGCCTCACATTAGAATTCTCTAACATCTTTCTGAGGATTCTGCAGTAAGCCCTTGCACTGATTTGTGTAAGACACTTAGTCTTAAGGAGAACAGCGAGGgagctgaatttttttctcaatttttccTCTGAGGTATGACCACATTTTAGGAGCCattagaaacacacaaaaatgttttgtatattattctATGTCAAACATCAATGAAACTACACAACCTTGCAAGAGCAGCACTAAGTCATCAGGTATTCAGTCACCCAGTTCAAGGTAGGTCTTCTCAACTCTCCACTCTTTCTACCATTGTTTTTTGTGAACACTTTGAGATTTGACCACATCTTCCGTTGAAGTTTGTGTTCTGGAAGGCTTGTGCTCTGAGATCCTAGAGGTACTAATGCTACCCTGCTTAGAAGTAACAATGTTCTCACGTTTTACTTGTGAGATGAACACATCCAGGTCAAAGTGAGAATGTTCTTCTCCGCTAGCTATTGGCGAGACttcattgttgttttgaaaagGGGTTAATGAACCTGGAGTAGGTGAAGAGGGAGAGGAAGGCAACAGGGggggaggagaagaaaagaaagaagccGGACTTCTCCTGCCATGCTGAAGAACATTGGAAGTGTACAGTAGAGAAGTTGCCTGCTTTTGTGCGAGTGAGTGAGGAAGCAGGGTAGGAGAAACGGGTAAAGGGGGAGACCCTGGTAAGGTTGGAGGTTCCTGAGGTGAACCGGGAGAATGAAGGCCTAGTTGTGTGCTTGCTGCCCAGCGTGAAATCTCCTGGAACAAATCAGCAGGTTCCTCAGCATTAAGCTGCTCAGGATCCCCCTCTTTGGGAGATGGGAGAGTGTTGCGCTTCCAATGAGACAAGTCCAGAATCAGCTTTGGCTCAGAATAGTGTTGGGGCTTCCCATCCCTCCATGCTATTTTATCCAAATATGAAGGAGAACCCACTTTGTAGTCACAGGAGCGCCCGCAGTCCAGCTCCATATAGTGGCCGCAGAGCCTGTCCAAAGACGAATGCGACTGCTCAAGAAAACGTTctgctgagctgctgtgagAGTGCTTTCCAGGGTCCACCAGCGCTTCCTCAATGAGGGAGGAGGAATTGGCCCGAGGATCTCTCTGGACCTCATCCTCCTCAGTCTCTCCCATTTCTGACACACTCTGTATGCAGCCACACTGCTCCTGCTGCTTCCAGCACAGATCTGATGAAA

Function

NR:

description
PREDICTED: mitogen-activated protein kinase 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156430 True 1227 lncRNA 0.47 1 14233028 14234254

Neighbor

gene id symbol gene type direction distance location
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 899 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 61235 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 347361 13879111 ~ 13885667 (+)
apex2 apex2 coding upstream 355068 13873546 ~ 13877960 (+)
csde1 csde1 coding upstream 364908 13838338 ~ 13868120 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding downstream 32371 14266625 ~ 14269429 (+)
prf1.5 LOC108265013 coding downstream 38734 14272988 ~ 14279281 (+)
ap3s1 ap3s1 coding downstream 686889 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 843416 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 901432 15135686 ~ 15147422 (+)
G132361 NA non-coding upstream 112613 14116975 ~ 14120415 (+)
G132391 NA non-coding upstream 145147 14085652 ~ 14087881 (+)
G132357 NA non-coding upstream 219407 14010503 ~ 14013621 (+)
G132138 pdzd4,LOC108437581 non-coding upstream 433412 13794582 ~ 13799616 (+)
G132136 NA non-coding upstream 438723 13793156 ~ 13794305 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding downstream 11322 14245576 ~ 14246134 (+)
G132424 NA non-coding downstream 14868 14249122 ~ 14249815 (+)
G132569 NA non-coding downstream 26025 14260279 ~ 14260655 (+)
G132603 NA non-coding downstream 93398 14327652 ~ 14327869 (+)
LOC117597773 grid2,LOC106580171 non-coding downstream 240388 14474642 ~ 14483736 (+)
aopep c5h9orf3,cunh9orf3 other upstream 210341 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 284220 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 441711 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1628323 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 2003027 12196593 ~ 12230001 (+)
G132595 atoh1 other downstream 87918 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 706047 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 745579 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 1144688 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1767807 16002061 ~ 16018818 (+)

Expression


Co-expression Network