G132595 (atoh1)


Basic Information

Item Value
gene id G132595
gene name atoh1
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14322172 ~ 14323450 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU156645
TTTAAAGTGCAAGTGGAGTTTAGAAGTTGCAAATCCTTcgagtttaaaaaaacaaacaaacaaacaaacaaaaaagcacaatCGTATTCTATGAAATGATCGTAGATGCATAAACTGGGTCACTTTTTTTCGGAAGACAGTTTCTGCATGACATCCGGGCCCATGGCACTGCTGCGCGCGGCAGTTGACGTGGCGTGGGGAATCTCGCCAATGTCACGACAAGGCAAACAGATTCTATTGGCGTCAAAGTtactgaaaacaacaacaacaacaacaataacaacaacaacaataacagcaacaacagcgtACATTTCAAATGGACATGAAATCGAAGTCAGGGCAACCAATGCAAACGGTAACCTATCGCAAAAGAATAGGGCGAATACGATTGACACAGAGAATCATGACGGACACGTCGGTGTCTTTGAGCGTCTCTAAAAGGCGCGCTGGCGGCTCAGCTTCAGTTCACACAGCTCGTCCTCGCTGTGCAGCTCCGCGTGTGGCTCATCCGAGTCGCTGAAGTGCGAGTGTGGCGAGAACTCTCCATCGCTCCGACTCGACCGCGGGGAGTCTTTGCTGCACTCAGAGGCAGACTTGCTCGCTCCGAGCGACACAAACGCGTCCTCCTCGTACGGGAACGACACACCGGCGAGCTGAACCGGAAATGAGGTTGGTGATCTCTCGCCTCCGTAGGCGGGCGGCAGCACATCACCATTATGCGCGTCATCTTCAGCGCCGGGAGCGCGCAGCAGGTCGGACAGCGCGTTGATGTAGATCTGTGCCATCTGGAGTGTCTCGTACTTGGACAGCTTCTTTTCGTTGTCAAAGGAGGGGATGACGCTGCGCAGCTCGTCGAAGGCGTGGTTCAGGCCGTGCATGCGCCGGCGCTCTCGTGCGTTCGCCGCTATACGTCTCTGCTTCTGCACCACGTTGGCGGGCTTGCTGGTCGGGGCGCGCTGCCTGCCCTCATCCGCCCGCGCCGCTCCCTTGAGGCGGCACAGCTCGCGCACACGTACGGCGCCCCCCACCCTTGCGCCCTTGTGCGCACCGGACACGCCCTCCGCGCTCGAGGAGCCCGAGCTGTGCGGCAGGTATTCCGCGTGCGCAGGAGCGAGCCAGGCGCGTGCGTCGCCGCCTTCCATCAGCGCCAAAGTGAGCGGAAAGCGCTCCGCACGCGCCGCGTCCGACTCCACCGCCGTCCTCGCGTCTTCGCAAGAGCTGCCCATGACGTCCATTTCCGTGTGGTTGCACGTCACGTCGGACACGGGACGGAGTT

Function

symbol description
atoh1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in neuron differentiation; positive regulation of neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including generation of neurons; inner ear morphogenesis; and positive regulation of inner ear auditory receptor cell differentiation. Predicted to be part of chromatin. Predicted to be active in nucleus.

NR:

description
PREDICTED: protein atonal homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU156645 True 1279 TUCP 0.58 1 14322172 14323450

Neighbor

gene id symbol gene type direction distance location
prf1.5 LOC108265013 coding upstream 42891 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 52743 14266625 ~ 14269429 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 90043 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 150379 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 436505 13879111 ~ 13885667 (+)
ap3s1 ap3s1 coding downstream 597693 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 754220 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 812236 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 833389 15156839 ~ 15163360 (+)
sncaip sncaip coding downstream 842195 15165645 ~ 15174722 (+)
G132569 NA non-coding upstream 61517 14260279 ~ 14260655 (+)
G132424 NA non-coding upstream 72357 14249122 ~ 14249815 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding upstream 76038 14245576 ~ 14246134 (+)
G132405 LOC108265425 non-coding upstream 87918 14233028 ~ 14234254 (+)
G132361 NA non-coding upstream 201757 14116975 ~ 14120415 (+)
G132603 NA non-coding downstream 4202 14327652 ~ 14327869 (+)
LOC117597773 grid2,LOC106580171 non-coding downstream 151192 14474642 ~ 14483736 (+)
LOC113529916 NA non-coding downstream 398980 14722430 ~ 14740962 (+)
G132959 NA non-coding downstream 419032 14742482 ~ 14744146 (+)
G132968 trim36 non-coding downstream 498532 14821982 ~ 14824363 (+)
aopep c5h9orf3,cunh9orf3 other upstream 299485 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 373364 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 530855 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1717467 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 2092171 12196593 ~ 12230001 (+)
commd10 commd10 other downstream 616851 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 656383 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 1055492 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1678611 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 2079298 16402748 ~ 16419509 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G50583 LOC108437602,LOC103398889 unknown NC_035902.1 CM008305.1 8342940 ~ 8344514 (+)