G132959


Basic Information

Item Value
gene id G132959
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14742482 ~ 14744146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157022
TGTAAATCATAACATTATTGTGAAAATCACTGTTGAGAGAAAAAGTACAGGAAAGTATTCAATTAACTTCTCAGCATGATCATGGTTTAAAATCACTTCTTCAAAGTGCTGTTATTAAATGAACCCTGTACATCTTGGAAAATACATCATTTACAGATAATTTTTCTCAGCAtgataataaatcataataaatcGAGAGCATCCTTTATGAGGATGCCAGTTTTCAAAGTTCCACATACAAAATAAGACCTTCGAGTGATATCACAACAATGCACGTAATAAATAAGGCGCAAAATAAATAGCTAATCTAGTTGACTTAAAGTGTCAGTTCCGAGGATGTGTTTCATACATACAGTCTTATGAATGAGTTCTCCATCAACGTTCAATCAAGTGCCATTCATTCTGCTCATCTCACTCGTACTCACTAATTAATTACCCGTGCTTTTGCCATCACGGCATTTACCTTGAATGGTTTTATGCCAATTAATAGCTGAAGGGAAAATGGTTGAGTAACACATAGATGAAAGCTGCTTGTCTCTTCAAACATGCATTTTGAGTTTGAGTTCTGCCATAACAGTATCAGTAAAAGCAACCGTTCAAGGGAAGTGAAGTCTCCATTCTTGCAAGGTCATTCTTAAATCACGTAAGAAGCATGTTCCAGTTTCACAGAGGGATGATATTGAGATCACAGCAAGGTGATGGCGAGAGCATGCgaaatctctttctctctctctctctctcagagctgTACAAGTAGGGCTGAGAGAGAGAACGCTGCCGCTCCCAGCAGATTGCTGTAAGTGGAGCAGCGGACCTCCGGGAGCAGACCTGCTGGATAGATAGAAGTGAGTTTCTTCAGGGTTTCCTTCCCCTCTGAATGCCCTTCGATGCTCATTGGTCCGAAGTGCAAAGCTGTCCCAACATTGGacgaaaaatatatatataaccaagCTCCTTGTACAGGGTGTAcagatatttttacatttatccaAGTCACCACAGAATGTGAATccattttttaacaaatatctTAAATGAAGCTCTTATGCACCATTTGGGAAGTGAAGTTTAGTGTGCTTtatgtattataaatatgaGGATTGCTGGATTGGGAGTTGACTGTTATCACATGTAGGGCAAGAACAGTTGCGTCTGAGAGTCATGTGAGTCGGGAGCAAAATGAACTCACCTGGTGTCTATTTATAGACGAGGCAGTGGTGATGACAAGAAGTTGCCACTGCTTCCTATTAAAATACTGTAAGAGCTATTTCTAAGCCACTGTACAAAAAGTCTCGGTTTTGATTTTCTGTTTATGCCATGTAAAAAAGTAGTAAAGTAGCATGCAATTAGTAAAGGTTAATGAGTGTTAGAATAATTCCCAGCTAGCAGCAAGAGCTTAAAATCCCTCAGAGTTGGCAACATGTGCATGGGCCACATTCGTTGGTGCAAAAAAGATGCTGGTGGGTAAATTACAAATGTGTACGTTCCGTACACACAAGATCTCTAACACAATAGACATTAAGCACAGCTGGATTTGATTTAAGACACGAGTGCTTGTCTTTCAGTTCTACCAAGTCTGGTATGTTCTCATAAACGCTCACCGTtatgttttctcttctctttgtcAATCAGTGGAGGTAAGTGGAGATGCTAAGCTTAAATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157022 True 1665 lncRNA 0.39 1 14742482 14744146

Neighbor

gene id symbol gene type direction distance location
prf1.5 LOC108265013 coding upstream 463201 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 473053 14266625 ~ 14269429 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 510353 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 570689 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 856815 13879111 ~ 13885667 (+)
ap3s1 ap3s1 coding downstream 176997 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 333524 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 391540 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 412693 15156839 ~ 15163360 (+)
sncaip sncaip coding downstream 421499 15165645 ~ 15174722 (+)
LOC113529916 NA non-coding upstream 1520 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 258746 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 414613 14327652 ~ 14327869 (+)
G132569 NA non-coding upstream 481827 14260279 ~ 14260655 (+)
G132424 NA non-coding upstream 492667 14249122 ~ 14249815 (+)
G132968 trim36 non-coding downstream 77836 14821982 ~ 14824363 (+)
G133220 NA non-coding downstream 465369 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 555038 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 599608 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 610315 15354461 ~ 15363971 (+)
G132595 atoh1 other upstream 419032 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 719795 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 793674 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 951165 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 2137777 12599698 ~ 12604705 (+)
commd10 commd10 other downstream 196155 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 235687 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 634796 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1257915 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1658602 16402748 ~ 16419509 (+)

Expression


Co-expression Network