G132968 (trim36)


Basic Information

Item Value
gene id G132968
gene name trim36
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14821982 ~ 14824363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157035
ACCCCacattgtaaattaaaaaataaaacaatatagaTACAAGTGACAGacagcttttcattttcattaaagcattaaaatcacaaaaagcaAACGTCACACCGCAGCTCGTTTTAAGAGTACAGTACGTCCTGTGGGGGAAATTATATTGCACACTACTTCACACACCTGCACCAAGCCATGAGACTTAACATGCTATAAAGTGCTATCTTTAAGATGAGTTAAAATGATCACTAAAAGACATCATGTCCTGTTTAATAAGCAATTACAGCTCACAGTATGGTGATACTCTACCACTAAGTCTACATCAAAAGTGATTAGTGAAAACAGAACTGTTTTTCCCCCTCAGAGACCGAACAGCTTAACGTGTACAGGGAAATGATTACTTTGTTGGTTACTATTACACACCGTGACACAAACATTGTAACAAGAACACAAGCCAGAAACTGTAAACTAATGTGCATAGATTCTCCCTTGAATCCACTGTGGAAAGAAATGTGATAAGAAACAATAATTAGTGTCTACAAAAAGTTACTACTGGAAGAGCATACCATGATTCCACTATTTCCTGCTGTGACAATGCCGTCATtcacatgattattttaattatcacAAACAAACCGATTTCTACTGACAAATTTTCAGGACACAACacttaaaatacattaaatattagtgaagagatttaaaaaaaaaaaaaaaaaacagtaaaccATCAAGTAGGAAAGGATCGAAAAGCActgaaatttgaaaaagcatcttaaaaaaaataataaaagacatCAGTTTGAAATGAAATCAAAGAGGTTCCAACAAGTTAAGAGACTTAAAATgtaggaataaaatgctttgatTTGGTAACTCACAGGGTTCCAGCTAAAGAGGCAAACAAACCCTTTGAGGTTTAGTGAATAGGCACGTGCTATACCACCACCTCAAAATCATCCAAGCATAAACCCAGTGCCAATTATTATTCCAGGACTGAGAGGTAGGTATCAAAAAGCCCATAGGGTGAGTACCTGAGGAATCACATGGCAACCCTACTCTATCTACCACTACTCCAGCGAAGTCCCTTTATAGCCAGTAATCCTGCTGCAAAAAAACCTGTGATCATTCACTAAGGCCATGTCAGTCTTTTCCTGTCATTTTCACACTGGCTGTGATGGTGCATATTAACCCAATCACCTTCTGAATCAGTGTTAGTACTCATACCCTGGTTAAAACCTagcagcacagctgtgattcaaATGCTactttgcattaaaaaagaaaagatacaTTCAAACTGCAAAAGCTTTTCAATGCTGCATTGAATTACATACCTATCACAACGAGGTGTCCTTACATGTATATGTGACAATCCACTGCGAGCAAGCGCTTTCATGGTGTTTTAAGACAGACTGTTTGGAATAGATTCAATTTCACTGCAAATTATTTATTAGATCATTCTTGATTATTCTTAAACAattcttattctttttcttaatagaaaaaaaaagcctgcccaaGCAGCATTTCTACAATCAGAACAGTTTACAAAGCCAGTTATTATTAGTGCACAGGTATTAGTTAGTGTCGATTAACTTAGTCATCTGCAACATCAGACAATCATTAAATTGCTCACACGTGAACAGCAAATAGGTGACATCTTTGCATTATATTAAGGTATAGTGTGTCCTTTTGCATTTCTGTGACTGTTAGTAAACCCTGATGTGTACAAGTGCTGACATAATCTAAACACCTGCCTAGTTGGTCTCCTAAAAGGCACTGAACCAAGGGTTTTTCAGGTTACTTGTGGCTCTTAAACTGAAATAGTGCACTGAAATAGTGTTTTCACAGATAGCTACATATCATTACTTGTGAGAAGCCAGGGACAAAATAAGCCAAAAGAATAGGATCGTTAGGGATCAGCAGATCAACTCAGACACATTCACATGTAAGAGAGGCGCTTGGCTGTGATGAACTCCTCCAGGTGGATGGCTCCGCCCCCCATGAGGGCGAACGCAGGGTACATGGTTCCGGAACAGTCCACCTGACGCTCGTAGAGGCAGCGCATCGAGTCAGCATCGTAGAAGAAGACGCGTCCGGCATCATAGTCGAGGCAGATGCCGATTCGCTGAGGAAGAGGCAGAACACGACTGCCGTGGTCTCCCGCGGCTGCAGTGTGGGACGCTTTGGGAATAAAGAGCTTGCCCATGCCTGCTGTGAGCAGAGTGAAGGGCTGCGAGAGCTCATAGCACGTGTCCTCGCTGCCACTGTCATGCCCGCTGTCATGG

Function

symbol description
trim36 Predicted to enable ubiquitin-protein transferase activity and zinc ion binding activity. Predicted to act upstream of or within regulation of cell cycle. Predicted to be located in cytoplasm; cytoskeleton; and membrane. Predicted to be integral component of membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in anencephaly. Orthologous to human TRIM36 (tripartite motif containing 36).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM36 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157035 True 2276 lncRNA 0.40 2 14821982 14824363

Neighbor

gene id symbol gene type direction distance location
prf1.5 LOC108265013 coding upstream 542701 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 552553 14266625 ~ 14269429 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 589853 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 650189 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 936315 13879111 ~ 13885667 (+)
ap3s1 ap3s1 coding downstream 96780 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 253307 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 311323 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 332476 15156839 ~ 15163360 (+)
sncaip sncaip coding downstream 341282 15165645 ~ 15174722 (+)
G132959 NA non-coding upstream 77836 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 81020 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 338246 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 494113 14327652 ~ 14327869 (+)
G132569 NA non-coding upstream 561327 14260279 ~ 14260655 (+)
G133220 NA non-coding downstream 385152 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 474821 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 519391 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 530098 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 577083 15401446 ~ 15401762 (+)
G132595 atoh1 other upstream 498532 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 799295 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 873174 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 1030665 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 2217277 12599698 ~ 12604705 (+)
commd10 commd10 other downstream 115938 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 155470 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 554579 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1177698 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1578385 16402748 ~ 16419509 (+)

Expression


Co-expression Network