commd10 (commd10)


Basic Information

Item Value
gene id commd10
gene name commd10
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14940301 ~ 14982884 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157181
aggCTGTGTATCACAATATTAAACCAGCATCTCTGAAGCAGCAGCTTGAAAACATCCACATTGCTCCAGACAAAGCTGAGGCATTTAGTCAGGCTTGGGCTACAGCTGGCCCAGAAGTGGTAGAGAAGATTAGACAGACGATATTTGCCCCCAAGAAGCTGGAGCATATAGGCTGGCAGCTCAACCTTCAGATGGGCCAGTCATCACAGGCTAAGCAAAAAGAGCCACACGCTGTGCTGGACCTGGGAGTCAGAGAGGAGGATGAGTCGGAGCATCTACAGAAGGTTCATATGGAATTCAGCCACCAGGAACTGTTGGAGTTCTACAACAAGctAGAGATGATTCAAGCCCAGCTGGATTCCCTGACTTGATGCTGATGGGACAGTTCATAAGGGCAAGTGTGCAGTGTATCAGCCACATTTCCCTTGAGTCCAGGGTCCAGGAGTCTTGTCAGGAAGGATTGGTGTCCTCAGTTTGttaatttctgtttaattaCCGCATCATGGTCTAAAAGTCTGTGTCTAATTTGTCATTTGTGTACCTTGCCTTTTGTGTGAGTCAGATATCGTGACTGAGAATTAACTCAAAGCACAAATGTCGTTCTTATTGTACACAgtacaaagttattgttattataaataCTGTCCCTACTGGTTGGATTATCTAATTTTGTTGTATATGTGGGTGAAGAAAATgaaatcaggaagaaaaaaaactaggaAGAAAGTAGTTGTTTATCATAAGCTCCCTCTCAATACATCTAGCCAGAGGTTTCAACATTtaaaagtgtgagtgtgaagtcACACTCTTGATCAGTTACTAAGTGTACTCAAGGGCCTGTGTCAGATGGCTTTACAGATTTAACTTTCATAAATCTGTCATAAAATGTGGCAGTGCATTCAACATGTGCTAATTGAGATGTCTTGAAACAAATGTGCACTGAAATTAATATGAAACAGAAGACTGGTCCTAAAATAACGAGAGATATTCTATGATACCTTATACCttatattttcatacatttctgTGCTGATCTAAACGTTCATTCAATTTGTAATGGAATTGCTAACTGTGGTGTATAGctaataaatgtgtaatgatCCCCTGCC
>XM_026914974.2
AATGGCTCCTTGATGTCTACATAGGTGCACTACGTAGGGTATGAAATAACGGCtctttatgtagtgcactatatatatCCAAAAGAGAGGTATTTGGGATCTGACTTATGGTTCCTAGTTAGCCAGATGAAAGACTGATGGTTAATATAAAGATTGATGAAACACTAGCATGGCTTTAATTGTCAAAGAAACACAGAGCATCAGAGACGCAGTAGCCTTCATCAACTCTATAGAGGTCAATAAGCTGTCCAGACTTCTCTCTCGCATTCTTCAGAAACTTCATCTTAAGGGCGAGCGCTCCTTCAGTGAAGATGAAGAGCAGAAACTACAGACTGCTTTAGCTTTAGAGAAACAAGCCCTTCACCTGGTGCTGGAGACTTCCTCATTCTTATTAGAACAGGCTGTGTATCACAATATTAAACCAGCATCTCTGAAGCAGCAGCTTGAAAACATCCACATTGCTCCAGACAAAGCTGAGGCATTTAGTCAGGCTTGGGCTACAGCTGGCCCAGAAGTGGTAGAGAAGATTAGACAGACAATATTTGCCCCCAAGAAGCTGGAGCATATAGGCTGGCAGCTCAACCTTCAGATGGGCCAGTCATCACAGGCTAAGCAAAAAGAGCCACACGCTGTGCTGGACCTGGGAGTCAGAGAGGAGGATGAGTCGGAGCATCTACAGAAGGTTCATATGGAATTCAGCCACCAGGAACTGTTGGAGTTCTACAACAAGctAGAGATGATTCAAGCCCAGCTGGATTCCCTGACTTGATGCTGATGGGACAGTTCATAAGGGCAAGTGTGCAGTGTATCAGCCACATTTCCCTTGAGTCCAGGGTCCAGGAGTCTTGTCAGGAAGGATTGGTGTCCTCAGTTTGttaatttctgtttaattaCCGCATCATGGTCTAAAAGTCTGTGTCTAATTTGTCATTTGTGTACCTTGCCTTTTGTGTGAGTCAGATATCGTGACTGAGAATTAACTCAAAGCACAAATGTCGTTCTTATTGTACACAgtacaaagttattgttattataaataCTGTCCCTACTGGTTGGATTATCTAATTTTGTTGTATATGTGGGTGAAGAAAATgaaatcaggaagaaaaaaaactaggaAGAAAGTAGTTGTTTATCATAAGCTCCCTCTCAATACATCTAGCCAGAGGTTTCAACATTtaaaagtgtgagtgtgaagtcACACTCTTGATCAGTTACTAAGTGTACTCAAGGGCCTGTGTCAGATGGCTTTACAGATTTAACTTTCATAAATCTGTCATAAAATGTGGCAGTGCATTCAACATGTGCTAATTGAGATGTCTTGAAACAAATGTGCACTGAAATTAATATGAAACAGAAGACTGGTCCTAAAATAACGAGAGATATTCTATGATACCTTATACCttatattttcatacatttctgTGCTGATCTAAACGTTCATTCAATTTGTAATGGAATTGCTAACTGTGGTGTATAGctaataaatgtgtaatgatCCCCTGCCATGAAAGGTCA
>XM_034306984.1
AAATGGCTCCTTGATGTCTACATAGGTGCACTACGTAGGGTATGAAATAACGGCtctttatgtagtgcactatatatatCCAAAAGAGAGGTATTTGGGATCTGACTTATGGTTCCTAGTTAGCCAGATGAAAGACTGATGGTTAATATAAAGATTGATGAAACACTAGCATGGCTTTAATTGTCAAAGAAACACAGAGCATCAGAGACGCAGTAGCCTTCATCAACTCTATAGAGGTCAATAAGCTGTCCAGACTTCTCTCTCGCATTCTTCAGAAACTTCATCTTAAGGGCGAGCGCTCCTTCAGTGAAGATGAAGAGCAGAAACTACAGACTGCTTTAGCTTTAGAGAAACAAGCCCTTCACCTGGTGCTGGAGACTTCCTCATTCTTATTAGAACAGGCTGTGTATCACAATATTAAACCAGCATCTCTGAAGCAGCAGCTTGAAAACATCCACATTGCTCCAGACAAAGCTGAGGCATTTAGTCAGGCTTGGGCTACAGCTGGCCCAGAAGTGGTAGAGAAGATTAGACAGACAATATTTGCCCCCAAGAAGCTGGAGCATATAGGCTGGCAGCTCAACCTTCAGATGGGCCAGTCATCACAGGCTAAGCAAAAAGAGCCACACGCTGTGCTGGACCTGGGAGTCAGAGAGGAGGATGAGTCGGAGACATGACACCAGGACGCTTATACgaatatattttgtgtgtgagacattcTGCCAGAGAGCTGCTGAATTGAGGATGAactataaagacagacagaaacttCAGAGCTTTGAACACCATTTTTTGATGAGAGTTTGGGATTTCTTTTTCGGAATGAAGTGCCCCAGTAACATCTGCTCAGATGATGGATGACTGTTAGCAGTAATGTTGAAGTTAGtaatgtgttagtgttaatgcaaAGGGAAAAGTGGACGCATTAAATGAAGCAGACCATGTTAGTGTAGATGTCTAAAACTAAACCATAAATCATGGTGGTAATTTTATAGTAAGTA

Function

symbol description
commd10 Orthologous to human COMMD10 (COMM domain containing 10).

NR:

description
COMM domain-containing protein 10

GO: NA

KEGG:

id description
K22566 COMMD10; COMM domain containing 10

RNA

RNA id representative length rna type GC content exon number start site end site
TU157181 False 1109 lncRNA 0.41 4 14943077 14982873
XM_026914974.2 True 1518 mRNA 0.41 7 14940302 14982884
XM_034306984.1 False 1001 mRNA 0.42 6 14940301 14951997

Neighbor

gene id symbol gene type direction distance location
ap3s1 ap3s1 coding upstream 2857 14921143 ~ 14937444 (+)
prf1.5 LOC108265013 coding upstream 661020 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 670872 14266625 ~ 14269429 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 708172 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 768508 14154858 ~ 14171793 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 94786 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 152802 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 173955 15156839 ~ 15163360 (+)
sncaip sncaip coding downstream 182761 15165645 ~ 15174722 (+)
snx2 snx2 coding downstream 212169 15195053 ~ 15209082 (+)
G132968 trim36 non-coding upstream 115938 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 196155 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 199339 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 456565 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 612432 14327652 ~ 14327869 (+)
G133220 NA non-coding downstream 226631 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 316300 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 360870 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 371577 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 418562 15401446 ~ 15401762 (+)
G132595 atoh1 other upstream 616851 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 917614 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 991493 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 1148984 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 2335596 12599698 ~ 12604705 (+)
srp19 srp19 other downstream 396058 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1019177 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1419864 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1597373 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1733249 16716133 ~ 16737984 (+)

Expression


Co-expression Network