G133220


Basic Information

Item Value
gene id G133220
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15209515 ~ 15209846 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157332
gtgatctttgtgactttaaccatagaatggttgttggtgtcagatgggctggtttgagtatttcagaaactgctgaactcctgggattgtcgatgttttgtgcatgctgtgatgcttttctgctcaccacagttgtaaagagtgatcaTATGAGTTACTGtgtccttcctggcagctcgaacctatctggccattttcctctgacctctcttatcaacaaggcgtttccacccacagaactgtggCTCACTccgtgttttttgtttttcgcaccattctgtgtaaactctagcgactgttgtgtgtgaaaatcccaggagatcagcaggtta

Function

GO:

id name namespace
GO:0008430 selenium binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157332 True 332 lncRNA 0.45 1 15209515 15209846

Neighbor

gene id symbol gene type direction distance location
snx2 snx2 coding upstream 433 15195053 ~ 15209082 (+)
sncaip sncaip coding upstream 34793 15165645 ~ 15174722 (+)
LOC113532232 lox coding upstream 46155 15156839 ~ 15163360 (+)
prr16 prr16 coding upstream 62093 15135686 ~ 15147422 (+)
dmxl1 dmxl1,LOC107571775 coding upstream 96697 15077670 ~ 15112818 (+)
prdm6 prdm6 coding downstream 37092 15246938 ~ 15276940 (+)
LOC117595717 nudt12 coding downstream 141380 15351226 ~ 15357477 (+)
LOC113531612 nudt12 coding downstream 148070 15357916 ~ 15364024 (+)
lrrc2 lrrc2 coding downstream 188426 15398272 ~ 15402724 (+)
spinb LOC108265781 coding downstream 208618 15418464 ~ 15439687 (+)
G132968 trim36 non-coding upstream 385152 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 465369 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 468553 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 725779 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 881646 14327652 ~ 14327869 (+)
G133260 NA non-coding downstream 89338 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 133908 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 144615 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 191600 15401446 ~ 15401762 (+)
G133342 NA non-coding downstream 215343 15425189 ~ 15426372 (+)
commd10 commd10 other upstream 226631 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 229611 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 886065 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1186828 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1260707 13890404 ~ 13948808 (+)
srp19 srp19 other downstream 169096 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 792215 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1192902 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1370411 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1506287 16716133 ~ 16737984 (+)

Expression


Co-expression Network