G133307


Basic Information

Item Value
gene id G133307
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15354461 ~ 15363971 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157456
tattaccTTAAAAAGTTTCTGACTCTTTGGAAAACAACATACTGGATTTAGATCAAGTTTCCTTTATATGCAGTCTTGAAAAGGTTTGACTTTTGGCACAACTTACTCTAAGGGTAAGTTGAACTCATGAGTGGGCTAAGTTAAGCAACTATTACATAGGtagaaaaaatgaataaagcacTTTTTGAAATACCCATATTCTTATTTATTGTGTTAGCAACTACCTTAACATGAAGTTGTTTCTACTTTTTTTCATGCAGTTATCATAACTCTGGACCTCAAATGAATTTGCTTAGAAAgcaaaaaacatatttttggacATATTTTGGACACATGGATATTTTTGCATACTGTTCTTTTGCactataacaaaaaataaaaagctatatgattaataaatgaaaatgacattattacacAGTGTAAAACAAAGTATGTAGTCAATTGGAGAATTCTGTCCATGCAGTGTGATTTCGTATAAATTTGTCAAACCTATtaacattttcataaattttgCAGGTAATAGATGCTCTTGTGAAGGATAACCAAGCAGTTTTTTTCATGCCTCCAAGACAAGCTATTGCCCATTATCTTGTGAAACACTGGATTGGAATAAACTCAAACCTTTAAACTGAATGTTACCAGCATTATTGGGGTGTTTTCCTAATTTGTCATGAGATGTGGTTGGGAGGTATGAGAGTTTGAGATGGACTCAAAAGTGCATCTTACATCATAAAActcttttaaattaatataattattatgaattaattGTAGTATTACTATATGAAATAGATGTAAGTGACCAGATTGTCATTCTAACAATCTTACAAATGATTACACTTGTAAGTTGTACTACCTTTCATTCCAGACTGCGAGGGTGGATTATTTCAGAGCCGGTGGTGTAttgccattttctcattttcttgcaAAGTTCCAACAGTAAATTTGTCACCTTGTGCCCAAGACTGGGTAGCCTGTAAAAGGTCCCACTTCGTCCTGCTAGTCCTCATTTCCAGGCTTATCTTGTCAAGAAGTTAAGGTAGCCTCTTGTCTGGCCAGCTTCATCAGGTTCTGTAGCGATATCAGAAGAtgtgtttactgcagtttcTGTAACAAGGCAGTTTTCACAGGGTGGAGTTGTTGGCCTCATGCCCAACCCCCAACCTGGAGGTCCAGGGGCTGAATCTAGTCTGGCCCCTGACCCAAGGCCTGTCTGGCACGGTTAGACCTGCCAGGGATATTTGTCCCTGCCATTGTAGCTCTCAAGTTCTCTGGGATGTGCAAATGGGTCCACCAATGACAAGGTAGCAGCCCAGGACCAGATAATTTACCAggataattgaaaaaaaaaattgagtatCAGGCTCTATTCGCTTGATTCTTGCTAATAAGTCCAATGTTCTAAAATGAGAAAGATAAGCTCCTTGGCCAAGTTTCCCCAGTAGGAACATAAAAAGGTAGAAGACATTTGCTGATCAGCCCCTTCTAAGAGGAAGAGCAAATATCTTCACTGCATTAGCTCATCAGCCTCATGTAAGAGGAAAAGCAAGTGTCTTCACTGCCAAATGCAAGAGAGCAGTGAAGTGAAAAGGAGAGTTTAGTACATCAGCCTTTCACAGAGTGCCCAGGTATACTTTCAGTGGCTGTGTCTCATTCTCTAACCTTGACGGAGAGCTCTGGTAATATCAACAACAGGAGACACTGCAGTGTATCCAACAGTCTATGCAACCAGTGTTGCTATGTTCTGGCCATTATCACAGCAGAGCATGAACAGTTATGGGTTTGGCCCCTGGAAGCATCTCCAGAATACTAAAATGTTCACAACCGGTCATGCACACCCTTGTGAGTGTACCATCTACCTGTTGTGCAggcaaatgaaacattttttcacTGTGGTGCAAAACACTACTGTGTTTTTAGTACAGTCAGCTTTTTCACTATAGCCAGAGGAAACATACCATGTTGTTGCCTAACCCACCATTCCTGCCAAAAGTGTGGAGGTTGcgatataataataaatctgccATTATTATATTAACCTTATCTCGCACATGAGAATGTGCCCAGCGTAGTCCTGTGTCCAGTGAGGGCTTTCAAGCCGTATGTGAAAGTGACAGCAAGCTGGCAGGTCACTGAACACTGTTTGGCTCTTCTGTCTAAAGAGAGCTTAACCTATTGGGTAAATAATGTGATCGCACAGGCATACTTGAACACAGGTCAAGAGGTATCTTCTTCCATTAAATGCCATTTGATGCTCCTTCCTGGGCAGCACTAATATAAGCGTAACTGAAAAGGAAATTGTGCTGGTGGTCTGGAATGAATGGAAAGAGAACAGAAagttatgtatgtaactgtggatCTACACCTTTTGAGTGGAGTACCACCTGGTCACTCTGGGTGAATGGCTGAACGATGGGGCTGATGTAGAGAGGACTTTTTATAGGCTACCATGGGGACAATATTTGGTCAACTTTGCTAATGGCATTTGGCCACAAATGCAGGAAAACGGGAATACATCACTAGTTCCAAAGGTAACCATTCTCCACTGAGTCATAGAGCCATGGTTAAATACCCTTCCAAACTCATGATAAAGAAATCTTCTTTGCTATGTTGTTTCAGTTATTTTCAcctttaaatacttttttcaaGTGGATGTAAATGTTTGTAGTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157456 True 2674 lncRNA 0.40 2 15354461 15363971

Neighbor

gene id symbol gene type direction distance location
prdm6 prdm6 coding upstream 77521 15246938 ~ 15276940 (+)
snx2 snx2 coding upstream 145379 15195053 ~ 15209082 (+)
sncaip sncaip coding upstream 179739 15165645 ~ 15174722 (+)
LOC113532232 lox coding upstream 191101 15156839 ~ 15163360 (+)
prr16 prr16 coding upstream 207039 15135686 ~ 15147422 (+)
lrrc2 lrrc2 coding downstream 34301 15398272 ~ 15402724 (+)
spinb LOC108265781 coding downstream 54493 15418464 ~ 15439687 (+)
csgalnact1b LOC108265223 coding downstream 78529 15442500 ~ 15452743 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding downstream 90077 15454048 ~ 15463883 (+)
LOC113533162 NA coding downstream 109705 15473676 ~ 15482696 (+)
G133306 NA non-coding upstream 10430 15343754 ~ 15344031 (+)
G133260 NA non-coding upstream 55074 15299184 ~ 15299387 (+)
G133220 NA non-coding upstream 144615 15209515 ~ 15209846 (+)
G132968 trim36 non-coding upstream 530098 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 610315 14742482 ~ 14744146 (+)
G133330 NA non-coding downstream 37475 15401446 ~ 15401762 (+)
G133342 NA non-coding downstream 61218 15425189 ~ 15426372 (+)
G133386 NA non-coding downstream 233437 15597408 ~ 15606339 (+)
LOC117597798 NA non-coding downstream 266482 15630453 ~ 15640958 (+)
G133617 NA non-coding downstream 607889 15971860 ~ 15972109 (+)
commd10 commd10 other upstream 371577 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 374557 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1031011 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1331774 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1405653 13890404 ~ 13948808 (+)
srp19 srp19 other downstream 14971 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 638090 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1038777 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1216286 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1352162 16716133 ~ 16737984 (+)

Expression


Co-expression Network