srp19 (srp19)


Basic Information

Item Value
gene id srp19
gene name srp19
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15378942 ~ 15384824 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157467
ACAtcaccacttcctgtttctgtaaTGATGAGGTATATGTCGCGTTTCACTAATGTAAGCGTGTCACTCTAGCAACATAGTTGTCCAGTATCAAAGTTTTGTTTCAGAAAGCTCATATAACGAAAGATGGCTTATTTAACAAACAACCCCGCTGATGAAAACAGGCTGTGGAAAACCCTTCCTGTGCTGAAATCAAGGATGTTCTAACTGCAGCAGGAATGAACGTCAGAGTTGAgAACAAGCTGTATCCAAGGGAATGGAATAGAGATGTACAGTTCAGAGGAAGAGTGCGAGTTCAAATCAAAAAAGAGGATGGAAGTTTGTGTCAGGAGAAATTTACCTCTAaaaAAGATGTTATGTTCTATGTGGCCGAGATGATTCCAAAGTTAAAGACAAGAACACAGAAAAGTGGAGGAGGTGACACAGGAGCACAACAAGGAGAAGgagggaagaaaggaaagaagaagaagaagtagctGTATGCCCCTGAAGATCCTCTATTCATACAAatgtgaacatttattttatagttgttcatgagtctcttgCATGTCTTGTCTATATAGAAACACCAGGCCTTAACAGTTCTGTTGGTCACTTGTTTCAAGTTTGTGGACATTATCAATTTCCATCATAAATGAAACCCAAGCAGcaacagaattttattttaaacctcTACATTTCTGacgttttattgttttagttaTTACAGTATTGTTGTTTCATATGAAAGCAAACTGTTAAGCTGTTTGTTGATGTAACAATTGGAAACAGTTAAGCTTTAGTTGTGTGTCAGAAATTGTAGAGTAATTTTTCATGCAACAATGAATATTTGTCCTTGTcagcaacaaataaaaatgaaatgcgtCAACGGCTCTTTTGATGAAGTATATCTTCCATTTTCCATtgttatcagattttttttcttcttgtgtgTTAAAAGGGTGGTACAAAGAGAAGCCAAATATAAAACCTGTATAAAGAAATTTGTTCAATGTGTTCATATTCTAGCAGTTAGAAATCagttctgctttttaaaatcccATACTTTCCTCTGGTATGCAGTTTACCTGCTGAATATGTTAAGGCCCTTCATTTGATCTGGCTACATTAGATTTCTCTGGCACCTTTCACAGAATACATAATTAAGGATCATAAGCTTGTGCTCGTTGTTTGTGACATTTTGGCCTTTTATGTGCCATTTGGTTTATAGACCATGTTTtaaggttattttttttatgttacaagttaaacagtggtgtagtga
>XM_026928348.2
GGCGCAGTGACACTGCAGGCACAtcaccacttcctgtttctgtaaTGATGAGGTATATGTCGCGTTTCACTAATGTAAGCGTGTCACTCTAGCAACATAGTTGTCCAGTATCAAAGTTTTGTTTCAGAAAGCTCATATAACGAAAGATGGCTTATTTAACAAACAACCCCGCTGATGAAAACAGGTACTTGTGTATATATCCAGCTTACATTAACAGTAAAAAGACATTAGCAGAGGGTCGAAGAATACCAGCTGAGAAGGCTGTGGAAAACCCTTCCTGTGCTGAAATCAAGGATGTTCTAACTGCAGCAGGAATGAACGTCAGAGTTGAgAACAAGCTGTATCCAAGGGAATGGAATAGAGATGTACAGTTCAGAGGAAGAGTGCGAGTTCAAATCAAAAAAGAGGATGGAAGTTTGTGTCAGGAGAAATTTACCTCTAaaaAAGATGTTATGTTCTATGTGGCCGAGATGATTCCAAAGTTAAAGACAAGAACACAGAAAAGTGGAGGAGGTGACACAGGAGCACAACAAGGAGAAGgagggaagaaaggaaagaagaagaagaagtagctGTATGCCCCTGAAGATCCTCTATTCATACAAatgtgaacatttattttatagttgttcatgagtctcttgCATGTCTTGTCTATATAGAAACACCAGGCCTTAACAGTTCTGTTGGTCACTTGTTTCAAGTTTGTGGACATTATCAATTTCCATCATAAATGAAACCCAAGCAGcaacagaattttattttaaacctcTACATTTCTGacgttttattgttttagttaTTACAGTATTGTTGTTTCATATGAAAGCAAACTGTTAAGCTGTTTGTTGATGTAACAATTGGAAACAGTTAAGCTTTAGTTGTGTGTCAGAAATTGTAGAGTAATTTTTCATGCAACAATGAATATTTGTCCTTGTcagcaacaaataaaaatgaaatgcgtCAACGGCT

Function

symbol description
srp19 Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition. Predicted to act upstream of or within SRP-dependent cotranslational protein targeting to membrane. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP19 (signal recognition particle 19).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0008152 metabolic process biological_process
GO:0048500 signal recognition particle cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0008312 7S RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157467 True 1267 lncRNA 0.36 4 15378962 15384824
XM_026928348.2 False 972 mRNA 0.38 5 15378942 15384433

Neighbor

gene id symbol gene type direction distance location
LOC113531612 nudt12 coding upstream 14918 15357916 ~ 15364024 (+)
LOC117595717 nudt12 coding upstream 21465 15351226 ~ 15357477 (+)
prdm6 prdm6 coding upstream 102002 15246938 ~ 15276940 (+)
snx2 snx2 coding upstream 169860 15195053 ~ 15209082 (+)
sncaip sncaip coding upstream 204220 15165645 ~ 15174722 (+)
lrrc2 lrrc2 coding downstream 13448 15398272 ~ 15402724 (+)
spinb LOC108265781 coding downstream 33640 15418464 ~ 15439687 (+)
csgalnact1b LOC108265223 coding downstream 57676 15442500 ~ 15452743 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding downstream 69224 15454048 ~ 15463883 (+)
LOC113533162 NA coding downstream 88852 15473676 ~ 15482696 (+)
G133307 NA non-coding upstream 14971 15354461 ~ 15363971 (+)
G133306 NA non-coding upstream 34911 15343754 ~ 15344031 (+)
G133260 NA non-coding upstream 79555 15299184 ~ 15299387 (+)
G133220 NA non-coding upstream 169096 15209515 ~ 15209846 (+)
G132968 trim36 non-coding upstream 554579 14821982 ~ 14824363 (+)
G133330 NA non-coding downstream 16622 15401446 ~ 15401762 (+)
G133342 NA non-coding downstream 40365 15425189 ~ 15426372 (+)
G133386 NA non-coding downstream 212584 15597408 ~ 15606339 (+)
LOC117597798 NA non-coding downstream 245629 15630453 ~ 15640958 (+)
G133617 NA non-coding downstream 587036 15971860 ~ 15972109 (+)
commd10 commd10 other upstream 396058 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 399038 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1055492 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1356255 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1430134 13890404 ~ 13948808 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 617237 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1017924 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1195433 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1331309 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 1475152 16859976 ~ 16868768 (+)

Expression


Co-expression Network