Gene
RNA
| Item | Value |
|---|---|
| gene id | G133342 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047602.1 |
| NCBI id | CM018548.1 |
| chromosome length | 30442583 |
| location | 15425189 ~ 15426372 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU157510 | True | 266 | lncRNA | 0.52 | 2 | 15425189 | 15426372 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lrrc2 | lrrc2 | coding | upstream | 22465 | 15398272 ~ 15402724 (+) |
| LOC113531612 | nudt12 | coding | upstream | 61165 | 15357916 ~ 15364024 (+) |
| LOC117595717 | nudt12 | coding | upstream | 67712 | 15351226 ~ 15357477 (+) |
| prdm6 | prdm6 | coding | upstream | 148249 | 15246938 ~ 15276940 (+) |
| snx2 | snx2 | coding | upstream | 216107 | 15195053 ~ 15209082 (+) |
| csgalnact1b | LOC108265223 | coding | downstream | 16128 | 15442500 ~ 15452743 (+) |
| LOC113535909 | LOC103035969,LOC108265984,LOC108430321 | coding | downstream | 27676 | 15454048 ~ 15463883 (+) |
| LOC113533162 | NA | coding | downstream | 47304 | 15473676 ~ 15482696 (+) |
| prxl2c | NA | coding | downstream | 473206 | 15899578 ~ 15905498 (+) |
| cdc14b | cdc14b,LOC108265480 | coding | downstream | 481157 | 15907529 ~ 15920012 (+) |
| G133330 | NA | non-coding | upstream | 23427 | 15401446 ~ 15401762 (+) |
| G133307 | NA | non-coding | upstream | 61218 | 15354461 ~ 15363971 (+) |
| G133306 | NA | non-coding | upstream | 81158 | 15343754 ~ 15344031 (+) |
| G133260 | NA | non-coding | upstream | 125802 | 15299184 ~ 15299387 (+) |
| G133220 | NA | non-coding | upstream | 215343 | 15209515 ~ 15209846 (+) |
| G133386 | NA | non-coding | downstream | 171036 | 15597408 ~ 15606339 (+) |
| LOC117597798 | NA | non-coding | downstream | 204081 | 15630453 ~ 15640958 (+) |
| G133617 | NA | non-coding | downstream | 545488 | 15971860 ~ 15972109 (+) |
| G133635 | NA | non-coding | downstream | 616468 | 16042840 ~ 16043039 (+) |
| G133721 | NA | non-coding | downstream | 738314 | 16164686 ~ 16170597 (+) |
| srp19 | srp19 | other | upstream | 40365 | 15378942 ~ 15384824 (+) |
| commd10 | commd10 | other | upstream | 442305 | 14940301 ~ 14982884 (+) |
| trnae-cuc_19 | NA | other | upstream | 445285 | 14979833 ~ 14979904 (+) |
| G132595 | atoh1 | other | upstream | 1101739 | 14322172 ~ 14323450 (+) |
| aopep | c5h9orf3,cunh9orf3 | other | upstream | 1402502 | 13949937 ~ 14022687 (+) |
| G133631 | smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 | other | downstream | 575689 | 16002061 ~ 16018818 (+) |
| si:ch211-166a6.5 | LOC108265755,LOC107714554 | other | downstream | 976376 | 16402748 ~ 16419509 (+) |
| mtmr3 | mtmr3,LOC107699659 | other | downstream | 1153885 | 16580257 ~ 16621766 (+) |
| bicdl1 | bicdl1,LOC107724381,LOC107699624 | other | downstream | 1289761 | 16716133 ~ 16737984 (+) |
| gucd1 | gucd1,LOC102792582 | other | downstream | 1433604 | 16859976 ~ 16868768 (+) |
