G133617


Basic Information

Item Value
gene id G133617
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15971860 ~ 15972109 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157835
tttggtgatggtggtggaaaGCACTAACACatgtgttcagttgggttgaaaCCATGGTAGGATATTAACTGTTTCATTGTATCTTGCAGTACACATATCTGAAAGCATCTGCAATCTAGAcaagtgtgattttctcacacagtgaatgctATGATAAGCAAGATACGCCTACTAAATTCAGTCTGTGATCAGATGCCAGCTTTGAAATGTCAGCAATGCTCCTGCGCCATCACATCAAAACAGAAGAGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157835 True 250 lncRNA 0.41 1 15971860 15972109

Neighbor

gene id symbol gene type direction distance location
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding upstream 44214 15923290 ~ 15927646 (+)
cdc14b cdc14b,LOC108265480 coding upstream 51848 15907529 ~ 15920012 (+)
prxl2c NA coding upstream 66362 15899578 ~ 15905498 (+)
LOC113533162 NA coding upstream 489164 15473676 ~ 15482696 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding upstream 507977 15454048 ~ 15463883 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding downstream 24216 15996325 ~ 16003311 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding downstream 33373 16005482 ~ 16010899 (+)
znf366 znf366,LOC108430334,LOC107573350 coding downstream 52263 16024372 ~ 16029359 (+)
mrps27 mrps27 coding downstream 62393 16034502 ~ 16042147 (+)
ptger4a LOC108265018 coding downstream 82811 16054920 ~ 16059663 (+)
LOC117597798 NA non-coding upstream 330902 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 365521 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 545488 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 570098 15401446 ~ 15401762 (+)
G133307 NA non-coding upstream 607889 15354461 ~ 15363971 (+)
G133635 NA non-coding downstream 70731 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 192577 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 199076 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 200181 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 358471 16330580 ~ 16362249 (+)
srp19 srp19 other upstream 587036 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 988976 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 991956 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1648410 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1949173 13949937 ~ 14022687 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 29952 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 430639 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 608148 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 744024 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 887867 16859976 ~ 16868768 (+)

Expression


Co-expression Network