G133631 (smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869)


Basic Information

Item Value
gene id G133631
gene name smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16002061 ~ 16018818 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157849
GGAAACTATACAATCCAAACAATGCCCAGCTAGGCATGGCTATAATGAGAGCAGGAGTGACCCACTGGCAGGCTGGACATATAGAGGTGGCACATGGCATGATCTGCAAAGCATATGCCATTCTCCTGGTGACTCATGGGCCCACACATCCCATTACTAAGGACTTAGAGGCTATGCGCACGCAGACAGAGATGGAGCTGCGCATGTTTAAGCAGAATGAGTACATTTACCACACCATGCGTGAGGCAGCGCTTAAAAACCAGCCCATGCAGATGATGCCAGAACCAGTTGAGGAGGGAATCAAGAGTCTTTTCCGCAAGAAGTGAcctcacacagctcacacattACCATCCTCACTATTACTCAGTATGGATTTCATCACTGTGACTTAAGATACTCAGTATCAGTATAACTGACAGCTATTTAAAACCACATGCAGTACTTTTCTGGATTTTATTAGTTAATATAATCAAAAGCATAGGTTTTAGGCTGTATTTTATAGGTCATATAATTCTTTTTGATTTAATAGCCTACACATTTTGAattgtgtattttgtaaataaagagtCATCACCAGTTGAAAGATTTATGttcaaagtgtgttattctaaGAACCCAAATGTCACTTTCAATGTGTCTAATTCAGCTGAAATTTACAGTGGTTAAGTTAGTGTCACATAGCACAATTATAAATGAAAGAGTGTCATGACAGCTGTGGAAAAATGTACTCAATCATATTTAAAAAGACCAGTGTTTATCATGACATGCGTTTGCTGGTTGTCTTGAGGACCACGTTGCCCACAGTCGTGgtctgaaaggaaaaaagagcacCACATTTTGGTCAGATGACTCTTTGGTAAATAATTAAGCACACGTAAGAAATGTAAGTAGacatttatagaaaaataaactttGACAATGGAACTGACtgttaaataaagcaaaatctCAATTTTACTTAGTCCATTGAAAATATCAAATTATGTCTCAGTATTAAATGAAGGGATATCTTCAATCTGTACTCACATGCACAATTGTGTTGGCGTCCACAAGCTCTGTGACTGAGTCGATacccttcagatttgtcttcagctTGTTGCCCTCTTTCGTCACTATGGCCTAGAAGATAGCAAGCCATGTTTAATAAGCACATCATGACGGGCTGTTTATGAAAAGTAATAAGTGCTTGAACCAACATCCTCAGGGCCGGCCAATGGCATAGGCGACATAAGTGGTTGTCTAGGGTGCAAAATAACAGAGGAGCGCAGCAcaagagtttgtgtgtgtgtg
>TU157862
TGACAACATATCACGTTGGACTAATTTAAACACTGCCTGTATCATGACGTGATTATGATACATCACGATAACGCGTTAGTTACGCCGCTAGTGCTATGCTATTATACTCTACGCATAAACATCATACGTttcaaaaatatgtgaaaaaagaacaaattttaaaatgattaggCCTGTAGTCTAAAGCATTCATGAATTGCAATCATTTAAGTTTAGCTATGTcatctaaatctaaaatctCGCCTAGGGCCCAACAGAGTCTGGGCCGGCCCTGAACATTCTAACGCGTGAAATAGTGCAAAACCTGATCTTTTATTGCATGAAGCACTGAATGCatgcacagagacacagagctaCAGAAATATGATGGTCTTGCCTTGACTTTTTCTCCAGTCATTGTCTCCAGTTCACACTCTTGTCCTACGGTGAAGGAGTTAACCATAACTTTGCTCCCTGTGGTTACTGTCACTTTGAAGTTATCTCCATTCTGTTCGATCTCGGAGACACTCTTGATGTCTTTGCCTTTCTCGATGAGGTCATCAGGAAGACCTAGAAGAAGAGTTTTTTCAATATTAATTCAGTCCAGCTACATCTCAGTCTAAACCCAAAATCTAGCACccccatttttttcttaatcaaaaaaaaacaaaaaaacaattgttTAGTTTGTTTGATTGAAATATTATGAACAACAGAACAGACATGTTGCATATCTTCTAATGGATCAGCTACATGGATCAAGTGTAAAGCATTTCCTCAGCACACCTACCCATAGCCTTCATGAAAGGCACAAAGCCCTCTTGGCTTTCCAGCTGATATTTTCCAGAGAAGGACATTGTGACAGGACCAATGACAGGGGAAATTCCaacttttctgactttttataTATCATAGAGTGATGTAATGATTAACCGAAGAGGGCGGAGATTCCGTCTGATGTTTGTACTATAATGACTCTTATTGGTTAACATGTTAGTACACACAATGCCTATTAAGGTTTGTAGAGTGA
>TU157866
GGAAACTATACAATCCAAACAATGCCCAGCTAGGCATGGCTATAATGAGAGCAGGAGTGACCCACTGGCAGGCTGGACATATAGAGGTGGCACATGGCATGATCTGCAAAGCATATGCCATTCTCCTGGTGACTCATGGGCCCACACATCCCATTACTAAGGACTTAGAGGCTATGCGCACGCAGACAGAGATGGAGCTGCGCATGTTTAAGCAGAATGAGTACATTTACCACACCATGCGTGAGGCAGCGCTTAAAAACCAGCCCATGCAGATGATGCCAGAACCAGTTGAGGAGGGAATCAAGAGTCTTTTCCGCAAGAAGTGAcctcacacagctcacacattACCATCCTCACTATTACTCAGTATGGATTTCATCACTGTGACTTAAGATACTCAGTATCAGTATAACTGACAGCTATTTAAAACCACATGCAGTACTTTTCTGGATTTTATTAGTTAATATAATCAAAAGCATAGGTTTTAGGCTGTATTTTATAGGTCATATAATTCCTTTTGATTTAATAGCCTACACATTTTGAattgtgtattttgtaaataaagagtCATCACCAGTTGAAAGATTTATGttcaaagtgtgttattctaaGAACCCAAATGTCACTTTCAATGTGTCTAATTCAGCTGAAATCTACAGTGGTTAAGTTAGTGTCACATAGCACAATTATAAATGAAAGAGTGTCATGACAGCTGTGGAAAAATGtactcaattttatttaaaaagaccaGTGTTTATCATGACATGCGTTTGCTGGTTCTCTTGAAGACCACGTTGCCCACAGTCATGGTCTGAAAGGAAACAAGAGCACCACATTTTGGTCAGATGACTCTTTGGTAAATAATTAAGCACACCTAAGAAATGTAAGTAGacatttagagaaaaataaacttTGATAATTTAACTGACTGTTAAATAAAGCGAAATCTCAATTTTACTTTATCCATTGAAAATATCAAATTATGTCTCAGTATTAAATGAAGGGATATCTTCAATCTGTACTCACATGCACAATTGTGTTGGCGTCCACAAGCTCTGTGACTGAGTCAATacccttcagatttgtcttcagctTGTTGCCCTCTTTCGTCACTATGGCCTAGAAGATAGCAAGCCATGTTTAATAAGCACATCATGACGGGCTGTTTATGAAAAGTAATAAGTGCTTGAACCAACATCCTCAGGGCCGGCCAATGGCATAGGCGACATAGGTGGTTGTCTAGGGTGCAAAAAGGAGCGCAGCAcaagagtttgtgtgtgtgattgtgagtgGGTTTAAGTTTAGTGCAAGTTAAGTGAggtgtattttctttaaaataaacttaaatgttgttttaatttcagttatgTTGCTGCTTGCTTTCACTTCACCAAAAAACTCTTAAGTGTcttcttttaaaattttaaaatgattaggCCTGTAGTCTAAAGCATTCATGAATTGCAATCATTTAAGTTTAGCTATGTcatctaaatctaaaatctCGCCTAGGGCCCAACAGAGTCTGGGCCGGCCCTGAACATTCTAACACATGAAATAGTGCAAAACCTGATCTTTTATTGCATGAAGCACTGAATGCatgcacagagacacagagctaCAGAAATATGATGGTCTTGCCTTGACTTTTTCTCCAGTCATTGTCTCCAGTTCACACTCTTGTCCTACGGTGAAGGAGTTAACCATAACTTTGCTCCCTGTGGTTACTGTCACTTTGAAGTTATCTCCATTCTGTTCGATCTCTGAGACACTCTTGATGTCTTTGCCTTTCTCGATGAGGTCATCAGGAAGACCTAGAAGAAGAGTTTTTTCAATATTAATTCAGTCCAGCTACATCTCAGTCTAAACCCAAAATCTAGCATccccatttttttcttaatcaaaaaaaacaaaaaaacaattgttTAGTTTGTTTGATTGAAATATTATGAACAACAGAACAGACATGTTGCATATCTTCTAATGGATCAGCTACATGGATCAAGTGTAAAGCATTTCCTCAGCACACCTACCCATAGCCTTCATGAAAGGCACAAAGCCCTCTTGGCTTTCCAGCTGATATTTTCCAGAGAAGGACATTGTGACAGGACCAATGACAGGGGAAATTCCaacttttctgactttttataTATCATAGAGTGATGTAATGATTAACCGAAGAGGGCGGAGATTCCGTCTGATGTTTGTACTATAATGACTCTTATTGGTTAACATGTT
>TU157869
TGACAACATATCACGTTGGACTAATTTAAACACTGCCTGTATCATGACGTGATTATGATACATCACGATAACGCGTTAGTTACGCCGCTAGTGCTATGCTATTATACTCTACGCATAAACATCATACGTttcaaaaatatgtgaaaaaagaacaaattttaaaatgattaggCCTGTAGTCTAAAGCATTCATGAATTGCAATCATTTAAGTTTAGCTATGTcatctaaatctaaaatctCGCCTAGGGCCCAACAGAGTCTGGGCCGGCCCTGAACATTCTAACGCGTGAAATAGTGCAAAACCTGATCTTTTATTGCATGAAGCACTGAATGCatgcacagagacacagagctaCAGAAATATGATGGTCTTGCCTTGACTTTTTCTCCAGTCATTGTCTCCAGTTCACACTCTTGTCCTACGGTGAAGGAGTTAACCATAACTTTGCTCCCTGTGGTTACTGTCACTTTGAAGTTATCTCCATTCTGTTCGATCTCGGAGACACTCTTGATGTCTTTGCCTTTCTCGATGAGGTCATCAGGACCCATAGCCTTCATGAAAGGCACAAAGCCCTCTTGGCTTTCCAGCTGATATTTTCCAGAGAAGGACATTGTGACAGGACCAATGACAGGGGAAATTCCaacttttctgactttttataTATCATAGAGTGATGTAATGATTAACCGAAGAGGGCGGAGATTCCGTCTGATGTTTGTACTATAATGACTCTTATTGGTTAACATGTT

Function

symbol description
smyd1b Enables histone methyltransferase activity (H3-K4 specific) and myosin binding activity. Acts upstream of or within heart contraction; histone H3-K4 methylation; and muscle cell development. Located in M band. Is expressed in cardiovascular system; musculature system; segmental plate; somite; and tail bud. Orthologous to human SMYD1 (SET and MYND domain containing 1).
fabp1 Enables antioxidant activity. Involved in cellular response to hydrogen peroxide; cellular response to hypoxia; and negative regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in cytosol and nucleoplasm. Biomarker of IgA glomerulonephritis and hypertension.

NR:

description
PREDICTED: histone-lysine N-methyltransferase SMYD1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157849 False 1290 TUCP 0.40 3 16002061 16011604
TU157862 False 1009 lncRNA 0.38 2 16011774 16018818
TU157866 True 2238 TUCP 0.39 4 16002061 16018783
TU157869 False 751 lncRNA 0.40 2 16011774 16018783

Neighbor

gene id symbol gene type direction distance location
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding upstream 74415 15923290 ~ 15927646 (+)
cdc14b cdc14b,LOC108265480 coding upstream 82049 15907529 ~ 15920012 (+)
prxl2c NA coding upstream 96563 15899578 ~ 15905498 (+)
LOC113533162 NA coding upstream 519365 15473676 ~ 15482696 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding upstream 538178 15454048 ~ 15463883 (+)
znf366 znf366,LOC108430334,LOC107573350 coding downstream 5554 16024372 ~ 16029359 (+)
mrps27 mrps27 coding downstream 15684 16034502 ~ 16042147 (+)
ptger4a LOC108265018 coding downstream 36102 16054920 ~ 16059663 (+)
loxhd1a loxhd1b,LOC108265797,LOC108430301 coding downstream 53956 16072774 ~ 16085108 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding downstream 91554 16110372 ~ 16124577 (+)
G133617 NA non-coding upstream 29952 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 361103 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 395722 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 575689 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 600299 15401446 ~ 15401762 (+)
G133635 NA non-coding downstream 24022 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 145868 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 152367 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 153472 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 311762 16330580 ~ 16362249 (+)
srp19 srp19 other upstream 617237 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1019177 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1022157 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1678611 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1979374 13949937 ~ 14022687 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 383930 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 561439 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 697315 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 841158 16859976 ~ 16868768 (+)
G134341 NA other downstream 1277293 17296111 ~ 17296883 (+)

Expression


Co-expression Network