G133722


Basic Information

Item Value
gene id G133722
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16171185 ~ 16171500 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU157979
agagattgcccagtatctgttgggggtggagtctggctaccattctggagtcaccgctttactgtggggtgttcttcaggcaAGAGGGAAATGTGGGTTAGAAAaagagtggctagaaagaagtaagggaagtAAGGGAAGCAACTCCAACTCCAACCCCAACCCCACAGACGGTTTTAGGTTGGCTTAagcactgactgactgagtgaatgggtgggtgatggctatctctacaagtgattgggaactagtaatctggctgagtgtaaggtgacttgagcaaccccatccccaccctgatatcttttatagctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU157979 True 316 lncRNA 0.49 1 16171185 16171500

Neighbor

gene id symbol gene type direction distance location
dpysl2a dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023 coding upstream 12699 16128186 ~ 16158486 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding upstream 46608 16110372 ~ 16124577 (+)
loxhd1a loxhd1b,LOC108265797,LOC108430301 coding upstream 86077 16072774 ~ 16085108 (+)
ptger4a LOC108265018 coding upstream 111522 16054920 ~ 16059663 (+)
mrps27 mrps27 coding upstream 129038 16034502 ~ 16042147 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding downstream 53114 16224614 ~ 16231225 (+)
igsf9b LOC108265804,LOC108430342 coding downstream 60601 16232101 ~ 16270087 (+)
ciao1 ciao1,LOC107714582,LOC107671031 coding downstream 122960 16294460 ~ 16301671 (+)
cdc45 cdc45,LOC107670985,LOC107699634 coding downstream 134327 16305827 ~ 16315310 (+)
zgc:63587 LOC108430351,LOC108265487,LOC103046559,LOC105014311 coding downstream 157242 16328742 ~ 16353557 (+)
G133721 NA non-coding upstream 588 16164686 ~ 16170597 (+)
G133635 NA non-coding upstream 128146 16042840 ~ 16043039 (+)
G133617 NA non-coding upstream 199076 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 530227 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 564846 15597408 ~ 15606339 (+)
G133724 NA non-coding downstream 790 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 159080 16330580 ~ 16362249 (+)
G133890 NA non-coding downstream 267766 16439266 ~ 16440523 (+)
LOC117597830 NA non-coding downstream 471990 16643490 ~ 16663314 (+)
LOC113533561 NA non-coding downstream 780048 16951548 ~ 16974937 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 152367 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 786361 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1188301 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1191281 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1847735 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 231248 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 408757 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 544633 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 688476 16859976 ~ 16868768 (+)
G134341 NA other downstream 1124611 17296111 ~ 17296883 (+)

Expression


Co-expression Network