gp1bb (gp1bb)


Basic Information

Item Value
gene id gp1bb
gene name gp1bb
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16371957 ~ 16375128 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910756.2
tgtgtgtgtgtgtgtgtaggcaacTTTATCAGTGTGACCCAGCTGTGTCTCTAGAACACTTGCTGTTATTGCAAGAGCAGACACTGTCCCTCTTTTGGGCCCCTGTTTCACGGAGAAGACATTTATATACTGTGTGTGCtggtatgaagtgtgtgttatttgccCTACTGGTTCTCGTCTGTGAGCTGGGAGCTGATGTAGGCAAAGCTGATGCTGTATGTCCACAGGGCTGTTTCTGCACAGCTGCTGTGGTGGACTGTAGCAGTCGTGGACTCACAACTGCCACACTGCCTTCATCTTTCCCCGTGAGCACCACTGAGCTCCAGCTCCATGATAACCACCTCACAGCACTGCCCACTGGACTGCTGGACGGCATGCAGGCGCTGCAACTGGTCACGCTGCATGGGAACCCGTGGGAGTGTGACTGTGCCGTGCTCTATCTGAGGGGATGGCTTTTAAAACAGAACAATGATGCTTTGATAAGAAATGTGAGCTGCAATTCTCCTCCTGGCCTGCAGGGGAGACTGGTGGCCTACCTATCAGAGGAGGAGGTGCTTAACACCTGTAATTATTGGCTGTGTGATCTGGCCTTGGCCTCACAGATCAGCTTGTTTGTCTTTATAGTGGTGCAAGGAATCCTCCTTGCTGTGGTGGTCTACTTCCTCCGCCGTTTCAACCAGCTGGGCTATGATGCACAGCGAGCAGCTGCAGAAAGCTTTCACAGCTGAGACCAACAGCATCTCACAAATCAAAGAGTGTGTCTCACTAAACAACAAAAGCTCCTGATGTGCAAGGCTGAGGAACCTCGTTTCACACCACAATGGCTGTCTTTCACTACTGTTTTAACTGCCCTCATCAACGTCTTGTCACTATTTCCATTGCGAAACCTTGTTGCTGTCTTAAGGAATGTAACCTTTATCCACTCAGGTGTAGGGTTGTAGTATAAGCCATGAGAGGAGGGATTAGGGCAACATAATCTGAGACTTCATGTGCTGAATATGCTGAGAAGGTATTCTGATCAGCCACAACTTCTATAATTAATGTGGTCTCGCAGgaatttaatttttcacatttggaAGATCCATGCATGCCAAAGTCATCCTGTCTGCTTTCTGGGTTTCATTCTCTCtcaaaatattaatacaataattCTGTTAAAATTGTCAACCAATCAAAATAGGCTTCAAATTTTGACTATTAATTCTAGTTACTCCAATGCTAAATTCTCAGAAGAGCAGTAACTAAAGAGAAACTCCTCCCACTACCGTTTTAAGCAAACATTACAGCATCTGTACACATTTGCTTTTCATATTCACAGGTACATTAAAACAATTTGGGGTCCCCAAGTGTTCAGAACCAGCGTTGCATACACTATAGATAACGAAGAGGGGAAGTTGATGACAGCATGCTGAAAACAGTAATGAAATGGGCCAGTGAGAGACTTGAAAAAGGTGCACATTACATCCTGCTTTACTTTACTAGTTATGGAATATGAAATAGCATCTGAAAGATTTATGCCAGTCAGCAAACTTTGGTGAAAACTATTAAATCACCCCATATGCAGTGTTTGCATTCACACTgcatttgtactgtatattttttcatgaaatatatTTGCAATGGAAGCTCTTAAAAaggttttattctttcttttttttttttatacaataaaattattttgtaatttggGTCTTTTA

Function

symbol description
gp1bb Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Bernard-Soulier syndrome. Orthologous to human GP1BB (glycoprotein Ib platelet subunit beta).

NR:

description
LOW QUALITY PROTEIN: platelet glycoprotein Ib beta chain-like

GO: NA

KEGG:

id description
K06262 GP1BB, CD42c; platelet glycoprotein Ib beta chain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910756.2 True 1697 mRNA 0.43 3 16371957 16375128

Neighbor

gene id symbol gene type direction distance location
sept5a sept5,LOC102226618 coding upstream 216 16355696 ~ 16371741 (+)
zgc:63587 LOC108430351,LOC108265487,LOC103046559,LOC105014311 coding upstream 18400 16328742 ~ 16353557 (+)
cdc45 cdc45,LOC107670985,LOC107699634 coding upstream 56647 16305827 ~ 16315310 (+)
ciao1 ciao1,LOC107714582,LOC107671031 coding upstream 70286 16294460 ~ 16301671 (+)
igsf9b LOC108265804,LOC108430342 coding upstream 101870 16232101 ~ 16270087 (+)
dhx37 dhx37 coding downstream 1017 16376145 ~ 16397625 (+)
rad9b rad9b coding downstream 48605 16423733 ~ 16439084 (+)
cux2b cux2 coding downstream 85430 16460558 ~ 16578689 (+)
LOC113524948 NA coding downstream 662693 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 685930 17061058 ~ 17081950 (+)
G133842 NA non-coding upstream 9708 16330580 ~ 16362249 (+)
G133724 NA non-coding upstream 199424 16172290 ~ 16172533 (+)
G133722 NA non-coding upstream 200457 16171185 ~ 16171500 (+)
G133721 NA non-coding upstream 201360 16164686 ~ 16170597 (+)
G133635 NA non-coding upstream 328918 16042840 ~ 16043039 (+)
G133890 NA non-coding downstream 64138 16439266 ~ 16440523 (+)
LOC117597830 NA non-coding downstream 268362 16643490 ~ 16663314 (+)
LOC113533561 NA non-coding downstream 576420 16951548 ~ 16974937 (+)
G134230 NA non-coding downstream 589706 16964834 ~ 16965057 (+)
G134238 NA non-coding downstream 616639 16991767 ~ 16991967 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 353139 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 987133 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1389073 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1392053 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 2048507 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 27620 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 205129 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 341005 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 484848 16859976 ~ 16868768 (+)
G134341 NA other downstream 920983 17296111 ~ 17296883 (+)

Expression


Co-expression Network