rad9b (rad9b)


Basic Information

Item Value
gene id rad9b
gene name rad9b
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16423733 ~ 16439084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026910757.2
GACACGGCCCGAGTCACATGATCCACCAGGTGGCGCTCGGAACACTGCTCACGTGCGGCGCTCTCGAGCGGCCTGGGTTTATGTGAACACGCTAGCTACCAGTCGTGTGGGGCGCGTCAAGTGTAAACGTCAACAAGATAAACCTGTTCAGCAATTTTACAACAGGAGAGCTACCACACACTGCTGACGACCATAAACTTTACTGCAAAAATGAGATGTGTGATTGAAGGAAATGGTGTGAAAGtttttggaAAGACAGTTCATGCTCTGTCACGGATTGGTGAGGAAATGTGGTTGGATCCACTGGAGAAAGGGGTAAAATGCCCAGCATCTACCACGTCTTGGCTCATGCAATACACCCTGGCTGTTAGGACAGTGAACAAGGCCCATTCGGCATATGCCtgtttcctcttctctcccctGTTCTTCCAGCATTATACCTCAACTTCAGACCAACTACAGGATAATAAGtctgcaaaatgcaaaatatccttaaagTCGGTGCTGCCCCTCTTCCGCAGCATCACCACATTAGAGCGCAGTGTGTACAGATGTGAGATAACTATCAACATCTTCGACAGCAGGGTGGTATTCCAGTTTAAGTGCAGAAATGGAATAACCAAGACACATAACTTGGGTTACCAAGAATGTGAAGCTCTGCAAGCAGTTTTTCCAGCTCACCTGTGTCCCAACGTTTTAAAGGCACATCCAAAACTTCTCAGTGACATTGTGATGCACTTCCCTGTCTCACAAGAGGAAATCACACTATCCATGTCACCCATTAGGGTGATACTGAAGAATTACTTTGAAGAGGACAATGATCGCATCATGTGTACAGAGATGTTTCTACATCCTGATGAGTTTGACTACTTCCATCTCAGAGTGGACTCAGACATAACCTTCTGTCTCAAAGAACTGAGAGGCTTGCTGACATTTGCAGAGTCTCATGGCCTTCAAGTGTCTGTCCAGTTTGGTTCACCTGGAAATCCTGTGTCGTTCAGTTTGGAGGATATGTTGCTGGAGGCTGTAGTAGTATTGGCTACGCTAGTGGATCCAGCCACTGAGAATCCATCCCAGGTGTCTGTTGCCCAGGAAGCTCCAACACACAGTGTAGTGGGTGTCTCTATTCACGAGTGTCCAGTAGAGGCAGAGGCTACTAATATAGTGCCCCACCGTCCAGATCATCCAGTTGGGGAACAGGTGGCCTCCAGCCAGGGAAGTCCATTCTTCAGACCAGCTTTCCATATGAGGAAGCTTATGCAACTAGTTGGGGGAGGAGAGAACTTTTCAAAATACAAAGCTCCTTTGAATGGAACAAGCTCTGGATCTGCTTTGACCACAACAGTAACACCAGCCACTTTAGAGCGAATGATCATGAGGAAAGCAACAAATCACAACTACCCAGTTTGGTGTATGCCAGTGACACTGAGGATGATGCTGGAGGCATTGGTAACAGAGAGGAAGAGTAAGTCAGATAACATACACCAGAGGACGTGTAGAGGTGCCAGGGGAGACACtgacatgttcatgtttttgaaaatgttttgataGCAGTGATATGACTTGTAATTGTTATGGCACTAAAgattttttacttttgctttattataattttattttacttatatgCCTATATGTATACGTAATCTATATATTATCTTGGAAGGAAGTGTTATAAATGGCTAATTGGTGAATAGATATAAAGTCAGCATTGGAGGCATGATCTAAGTGCCTCACACTGATGTGATGAACTATTAGCAAGTATCACAAAAAGACTGCAGAAACTAAACACAGTTCACTGAATGAGTTTGTAACAGTATAGTTAAGGAAGCACTCCATATGTATTCACATTAGCAAACACACCCAAATAAACATTTGCATGAATATATTATGTTTAGAAAAGCTTGAATGATTAAAAAGGACTTTTTACTGAA
>XM_026910758.2
TGACACGGCCCGAGTCACATGATCCACCAGGTGGCGCTCGGAACACTGCTCACGTGCGGCGCTCTCGAGCGGCCTGGGTTTATGTGAACACGCTAGCTACCAGTCGTGTGGGGCGCGTCAAGTGTAAACGTCAACAAGATAAACCTGTTCAGCAATTTTACAAGAGAGCTACCACACACTGCTGACGACCATAAACTTTACTGCAAAAATGAGATGTGTGATTGAAGGAAATGGTGTGAAAGtttttggaAAGACAGTTCATGCTCTGTCACGGATTGGTGAGGAAATGTGGTTGGATCCACTGGAGAAAGGGGTAAAATGCCCAGCATCTACCACGTCTTGGCTCATGCAATACACCCTGGCTGTTAGGACAGTGAACAAGGCCCATTCGGCATATGCCtgtttcctcttctctcccctGTTCTTCCAGCATTATACCTCAACTTCAGACCAACTACAGGATAATAAGtctgcaaaatgcaaaatatccttaaagTCGGTGCTGCCCCTCTTCCGCAGCATCACCACATTAGAGCGCAGTGTGTACAGATGTGAGATAACTATCAACATCTTCGACAGCAGGGTGGTATTCCAGTTTAAGTGCAGAAATGGAATAACCAAGACACATAACTTGGGTTACCAAGAATGTGAAGCTCTGCAAGCAGTTTTTCCAGCTCACCTGTGTCCCAACGTTTTAAAGGCACATCCAAAACTTCTCAGTGACATTGTGATGCACTTCCCTGTCTCACAAGAGGAAATCACACTATCCATGTCACCCATTAGGGTGATACTGAAGAATTACTTTGAAGAGGACAATGATCGCATCATGTGTACAGAGATGTTTCTACATCCTGATGAGTTTGACTACTTCCATCTCAGAGTGGACTCAGACATAACCTTCTGTCTCAAAGAACTGAGAGGCTTGCTGACATTTGCAGAGTCTCATGGCCTTCAAGTGTCTGTCCAGTTTGGTTCACCTGGAAATCCTGTGTCGTTCAGTTTGGAGGATATGTTGCTGGAGGCTGTAGTAGTATTGGCTACGCTAGTGGATCCAGCCACTGAGAATCCATCCCAGGTGTCTGTTGCCCAGGAAGCTCCAACACACAGTGTAGTGGGTGTCTCTATTCACGAGTGTCCAGTAGAGGCAGAGGCTACTAATATAGTGCCCCACCGTCCAGATCATCCAGTTGGGGAACAGGTGGCCTCCAGCCAGGGAAGTCCATTCTTCAGACCAGCTTTCCATATGAGGAAGCTTATGCAACTAGTTGGGGGAGGAGAGAACTTTTCAAAATACAAAGCTCCTTTGAATGGAACAAGCTCTGGATCTGCTTTGACCACAACAGTAACACCAGCCACTTTAGAGCGAATGATCATGAGGAAAGCAACAAATCACAACTACCCAGTTTGGTGTATGCCAGTGACACTGAGGATGATGCTGGAGGCATTGGTAACAGAGAGGAAGAGTAAGTCAGATAACATACACCAGAGGACGTGTAGAGGTGCCAGGGGAGACACtgacatgttcatgtttttgaaaatgttttgataGCAGTGATATGACTTGTAATTGTTATGGCACTAAAgattttttacttttgctttattataattttattttacttatatgCCTATATGTATACGTAATCTATATATTATCTTGGAAGGAAGTGTTATAAATGGCTAATTGGTGAATAGATATAAAGTCAGCATTGGAGGCATGATCTAAGTGCCTCACACTGATGTGATGAACTATTAGCAAGTATCACAAAAAGACTGCAGAAACTAAACACAGTTCACTGAATGAGTTTGTAACAGTATAGTTAAGGAAGCACTCCATATGTATTCACATTAGCAAACACACCCAAATAAACATTTGCATGAATATATTATGTTTAGAAAAGCTTGAATGATTAAAAAGGACTTTTTACTGAA
>XM_026910759.2
ACACGGCCCGAGTCACATGATCCACCAGGTGGCGCTCGGAACACTGCTCACGTGCGGCGCTCTCGAGCGGCCTGGGTTTATGTGAACACGCTAGCTACCAGTCGTGTGGGGCGCGTCAAGTGTAAACGTCAACAAGATAAACCTGTTCAGCAATTTTACAACAGGAGAGCTACCACACACTGCTGACGACCATAAACTTTACTGCAAAAATGAGATGTGTGATTGAAGGAAATGGTGTGAAAGtttttggaAAGACAGTTCATGCTCTGTCACGGATTGGTGAGGAAATGTGGTTGGATCCACTGGAGAAAGGGCTGGCTGTTAGGACAGTGAACAAGGCCCATTCGGCATATGCCtgtttcctcttctctcccctGTTCTTCCAGCATTATACCTCAACTTCAGACCAACTACAGGATAATAAGtctgcaaaatgcaaaatatccttaaagTCGGTGCTGCCCCTCTTCCGCAGCATCACCACATTAGAGCGCAGTGTGTACAGATGTGAGATAACTATCAACATCTTCGACAGCAGGGTGGTATTCCAGTTTAAGTGCAGAAATGGAATAACCAAGACACATAACTTGGGTTACCAAGAATGTGAAGCTCTGCAAGCAGTTTTTCCAGCTCACCTGTGTCCCAACGTTTTAAAGGCACATCCAAAACTTCTCAGTGACATTGTGATGCACTTCCCTGTCTCACAAGAGGAAATCACACTATCCATGTCACCCATTAGGGTGATACTGAAGAATTACTTTGAAGAGGACAATGATCGCATCATGTGTACAGAGATGTTTCTACATCCTGATGAGTTTGACTACTTCCATCTCAGAGTGGACTCAGACATAACCTTCTGTCTCAAAGAACTGAGAGGCTTGCTGACATTTGCAGAGTCTCATGGCCTTCAAGTGTCTGTCCAGTTTGGTTCACCTGGAAATCCTGTGTCGTTCAGTTTGGAGGATATGTTGCTGGAGGCTGTAGTAGTATTGGCTACGCTAGTGGATCCAGCCACTGAGAATCCATCCCAGGTGTCTGTTGCCCAGGAAGCTCCAACACACAGTGTAGTGGGTGTCTCTATTCACGAGTGTCCAGTAGAGGCAGAGGCTACTAATATAGTGCCCCACCGTCCAGATCATCCAGTTGGGGAACAGGTGGCCTCCAGCCAGGGAAGTCCATTCTTCAGACCAGCTTTCCATATGAGGAAGCTTATGCAACTAGTTGGGGGAGGAGAGAACTTTTCAAAATACAAAGCTCCTTTGAATGGAACAAGCTCTGGATCTGCTTTGACCACAACAGTAACACCAGCCACTTTAGAGCGAATGATCATGAGGAAAGCAACAAATCACAACTACCCAGTTTGGTGTATGCCAGTGACACTGAGGATGATGCTGGAGGCATTGGTAACAGAGAGGAAGAGTAAGTCAGATAACATACACCAGAGGACGTGTAGAGGTGCCAGGGGAGACACtgacatgttcatgtttttgaaaatgttttgataGCAGTGATATGACTTGTAATTGTTATGGCACTAAAgattttttacttttgctttattataattttattttacttatatgCCTATATGTATACGTAATCTATATATTATCTTGGAAGGAAGTGTTATAAATGGCTAATTGGTGAATAGATATAAAGTCAGCATTGGAGGCATGATCTAAGTGCCTCACACTGATGTGATGAACTATTAGCAAGTATCACAAAAAGACTGCAGAAACTAAACACAGTTCACTGAATGAGTTTGTAACAGTATAGTTAAGGAAGCACTCCATATGTATTCACATTAGCAAACACACCCAAATAAACATTTGCATGAATATATTATGTTTAGAAAAGCTTGAATGATTAAAAAGGACTTTTTACTGAA
>XM_026910760.2
ACGGCCCGAGTCACATGATCCACCAGGTGGCGCTCGGAACACTGCTCACGTGCGGCGCTCTCGAGCGGCCTGGGTTTATGTGAACACGCTAGCTACCAGTCGTGTGGGGCGCGTCAAGTGTAAACGTCAACAAGATAAACCTGTTCAGCAATTTTACAACAGGAGAGCTACCACACACTGCTGACGACCATAAACTTTACTGCAAAAATGAGATGTGTGATTGAAGGAAATGGTGTGAAAGtttttggaAAGACAGTTCATGCTCTGTCACGGATTGGTGAGGAAATGTGGTTGGATCCACTGGAGAAAGGGGTAAAATGCCCAGCATCTACCACGTCTTGGCTCATGCAATACACCCTGGCTGTTAGGACAGTGAACAAGGCCCATTCGGCATATGCCtgtttcctcttctctcccctGTTCTTCCAGCATTATACCTCAACTTCAGACCAACTACAGGATAATAAGtctgcaaaatgcaaaatatccttaaagTCGGTGCTGCCCCTCTTCCGCAGCATCACCACATTAGAGCGCAGTGTGTACAGATGTGAGATAACTATCAACATCTTCGACAGCAGGGTGGTATTCCAGTTTAAGTGCAGAAATGGAATAACCAAGACACATAACTTGGGTTACCAAGAATGTGAAGCTCTGCAAGCAGTTTTTCCAGCTCACCTGTGTCCCAACGTTTTAAAGGCACATCCAAAACTTCTCAGTGACATTGTGATGCACTTCCCTGTCTCACAAGAGGAAATCACACTATCCATGTCACCCATTAGGGTGATACTGAAGAATTACTTTGAAGAGGACAATGATCGCATCATGTGTACAGAGATGTTTCTACATCCTGATGAGTTTGACTACTTCCATCTCAGAGTGGACTCAGACATAACCTTCTGTCTCAAAGAACTGAGAGGCTTGCTGACATTTGCAGAGTCTCATGGCCTTCAAGTGTCTGTCCAGTTTGGTTCACCTGGAAATCCTGTGTCGTTCAGTTTGGAGGATATGTTGCTGGAGGCTGTAGTAGTATTGGCTACGCTAGTGGATCCAGCCACTGAGAATCCATCCCAGGTGTCTGTTGCCCAGGAAGCTCCAACACACAGTGTAGTGGGTGTCTCTATTCACGAGTGTCCAGTAGAGGCAGAGGCTACTAATATAGTGCCCCACCGTCCAGATCATCCAGTTGGGGAACAGGTGGCCTCCAGCCAGGGAAGTCCATTCTTCAGACCAGCTTTCCATATGAGGAAGCTTATGCAACTAGTTGGGGGAGGAGAGAACTTTTCAAAATACAAAGCTCCTTTGAATGGAACAAGCTCTGGATCTGCTTTGACCACAACAGTAACACCAGCCACTTTAGAGATCTGTTCTCTGCTTTTTGGGGCTGTAGCGAATGATCATGAGGAAAGCAACAAATCACAACTACCCAGTTTGGTGTATGCCAGTGACACTGAGGATGATGCTGGAGGCATTGGTAACAGAGAGGAAGAGTAAGTCAGATAACATACACCAGAGGACGTGTAGAGGTGCCAGGGGAGACACtgacatgttcatgtttttgaaaatgttttgataGCAGTGATATGACTTGTAATTGTTATGGCACTAAAgattttttacttttgctttattataattttattttacttatatgCCTATATGTATACGTAATCTATATATTATCTTGGAAGGAAGTGTTATAAATGGCTAATTGGTGAATAGATATAAAGTCAGCATTGGAGGCATGATCTAAGTGCCTCACACTGATGTGATGAACTATTAGCAAGTATCACAAAAAGACTGCAGAAACTAAACACAGTTCACTGAATGAGTTTGTAACAGTATAGTTAAGGAAGCACTCCATATGTATTCACATTAGCAAACACACCCAAATAAACATTTGCATGAATATATTATGTTTAGAAAAGCTTGAATGATTAAAAAGGACTTTTTACTGAA
>XM_026910762.2
CGGCCCGAGTCACATGATCCACCAGGTGGCGCTCGGAACACTGCTCACGTGCGGCGCTCTCGAGCGGCCTGGGTTTATGTGAACACGCTAGCTACCAGTCGTGTGGGGCGCGTCAAGTGTAAACGTCAACAAGATAAACCTGTTCAGCAATTTTACAACAGGAGAGCTACCACACACTGCTGACGACCATAAACTTTACTGCAAAAATGAGATGTGTGATTGAAGGAAATGGTGTGAAAGtttttggaAAGACAGTTCATGCTCTGTCACGGATTGGTGAGGAAATGTGGTTGGATCCACTGGAGAAAGGGCTGGCTGTTAGGACAGTGAACAAGGCCCATTCGGCATATGCCtgtttcctcttctctcccctGTTCTTCCAGCATTATACCTCAACTTCAGACCAACTACAGGATAATAAGtctgcaaaatgcaaaatatccttaaagTCGGTGCTGCCCCTCTTCCGCAGCATCACCACATTAGAGCGCAGTGTGTACAGATGTGAGATAACTATCAACATCTTCGACAGCAGGGTGGTATTCCAGTTTAAGTGCAGAAATGGAATAACCAAGACACATAACTTGGGTTACCAAGAATGTGAAGCTCTGCAAGCAGTTTTTCCAGCTCACCTGTGTCCCAACGTTTTAAAGGCACATCCAAAACTTCTCAGTGACATTGTGATGCACTTCCCTGTCTCACAAGAGGAAATCACACTATCCATGTCACCCATTAGGGTGATACTGAAGAATTACTTTGAAGAGGACAATGATCGCATCATGTGTACAGAGATGTTTCTACATCCTGATGAGTTTGACTACTTCCATCTCAGAGTGGACTCAGACATAACCTTCTGTCTCAAAGAACTGAGAGGCTTGCTGACATTTGCAGAGTCTCATGGCCTTCAAGTGTCTGTCCAGTTTGGTTCACCTGGAAATCCTGTGTCGTTCAGTTTGGAGGATATGTTGCTGGAGGCTGTAGTAGTATTGGCTACGCTAGTGGATCCAGCCACTGAGAATCCATCCCAGGTGTCTGTTGCCCAGGAAGCTCCAACACACAGTGTAGTGGGTGTCTCTATTCACGAGTGTCCAGTAGAGGCAGAGGCTACTAATATAGTGCCCCACCGTCCAGATCATCCAGTTGGGGAACAGGTGGCCTCCAGCCAGGGAAGTCCATTCTTCAGACCAGCTTTCCATATGAGGAAGCTTATGCAACTAGTTGGGGGAGGAGAGAACTTTTCAAAATACAAAGCTCCTTTGAATGGAACAAGCTCTGGATCTGCTTTGACCACAACAGTAACACCAGCCACTTTAGAGATCTGTTCTCTGCTTTTTGGGGCTGTAGCGAATGATCATGAGGAAAGCAACAAATCACAACTACCCAGTTTGGTGTATGCCAGTGACACTGAGGATGATGCTGGAGGCATTGGTAACAGAGAGGAAGAGTAAGTCAGATAACATACACCAGAGGACGTGTAGAGGTGCCAGGGGAGACACtgacatgttcatgtttttgaaaatgttttgataGCAGTGATATGACTTGTAATTGTTATGGCACTAAAgattttttacttttgctttattataattttattttacttatatgCCTATATGTATACGTAATCTATATATTATCTTGGAAGGAAGTGTTATAAATGGCTAATTGGTGAATAGATATAAAGTCAGCATTGGAGGCATGATCTAAGTGCCTCACACTGATGTGATGAACTATTAGCAAGTATCACAAAAAGACTGCAGAAACTAAACACAGTTCACTGAATGAGTTTGTAACAGTATAGTTAAGGAAGCACTCCATATGTATTCACATTAGCAAACACACCCAAATAAACATTTGCATGAATATATTATGTTTAGAAAAGCTTGAATGATTAAAAAGGACTTTTTACTGAA

Function

symbol description
rad9b Predicted to be involved in DNA integrity checkpoint signaling; DNA repair; and cellular response to ionizing radiation. Predicted to act upstream of or within DNA damage checkpoint signaling. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD9B (RAD9 checkpoint clamp component B).

NR:

description
cell cycle checkpoint control protein RAD9B isoform X2

GO: NA

KEGG:

id description
K10995 RAD9B; cell cycle checkpoint control protein RAD9B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026910757.2 False 1934 mRNA 0.44 12 16423734 16439084
XM_026910758.2 False 1932 mRNA 0.44 12 16423733 16439084
XM_026910759.2 False 1888 mRNA 0.43 12 16423735 16439084
XM_026910760.2 True 1959 mRNA 0.44 12 16423737 16439084
XM_026910762.2 False 1913 mRNA 0.43 12 16423738 16439084

Neighbor

gene id symbol gene type direction distance location
dhx37 dhx37 coding upstream 26108 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 48605 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 51992 16355696 ~ 16371741 (+)
zgc:63587 LOC108430351,LOC108265487,LOC103046559,LOC105014311 coding upstream 70176 16328742 ~ 16353557 (+)
cdc45 cdc45,LOC107670985,LOC107699634 coding upstream 108423 16305827 ~ 16315310 (+)
cux2b cux2 coding downstream 21474 16460558 ~ 16578689 (+)
LOC113524948 NA coding downstream 598737 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 621974 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 910232 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 972024 17411108 ~ 17449062 (+)
G133842 NA non-coding upstream 61484 16330580 ~ 16362249 (+)
G133724 NA non-coding upstream 251200 16172290 ~ 16172533 (+)
G133722 NA non-coding upstream 252233 16171185 ~ 16171500 (+)
G133721 NA non-coding upstream 253136 16164686 ~ 16170597 (+)
G133635 NA non-coding upstream 380694 16042840 ~ 16043039 (+)
G133890 NA non-coding downstream 182 16439266 ~ 16440523 (+)
LOC117597830 NA non-coding downstream 204406 16643490 ~ 16663314 (+)
LOC113533561 NA non-coding downstream 512464 16951548 ~ 16974937 (+)
G134230 NA non-coding downstream 525750 16964834 ~ 16965057 (+)
G134238 NA non-coding downstream 552683 16991767 ~ 16991967 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 4224 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 404915 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 1038909 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1440849 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1443829 14979833 ~ 14979904 (+)
mtmr3 mtmr3,LOC107699659 other downstream 141173 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 277049 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 420892 16859976 ~ 16868768 (+)
G134341 NA other downstream 857027 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 1591891 18030975 ~ 18048889 (+)

Expression


Co-expression Network