mpeg1.1 (LOC108265423,LOC108437597,LOC108437601,LOC108257561)


Basic Information

Item Value
gene id mpeg1.1
gene name LOC108265423,LOC108437597,LOC108437601,LOC108257561
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14266625 ~ 14269429 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924367.2
TACAGCAGTCTCTCCTGAAAATCATGGGCTCAgaatacctctctctctctctattggcTATCTTTGCATTTATCAGTACTGCTGATTTTCATGCTGTTATTCGTTCAAGCAATGGGCTTCGTGAGTGCCGCAAAAACCTTAGTGCACCAGCACTCGAGGTTCTCCCTGGTGGAGGCTGGGACAACCTGCGCAATTTGGATATGGGTCGAGTGATGAACCTAAGCTATTCACAATGCCAGACCACAGAGGATGGCATCTACCTCATTCCAGACGAGACATTTGTCATTCCGCAGAAGGTGAGCTCAGTAGAGATGAACTCTGAGATCATCAGCTCATGGCTTGAACAGAAAAGCTCCACTTCGAGATCAATCAATGTTGAGGCTTCCTTCGACAAATTGGTGAATGGCAAGTTCTCTGGTGAGAGCAAACGCATGAAAACCCATCAAGTGAAGGATAATTCAGTCACAGCTCGGGTACAGgTGCGTAACCATCTGTACACAGTAAAGGCATATCCTGATTTCACTCTGGATGCACGTTTTGCCCGACAGGCTGAGGAAATTGCAGATGCCATTGAGAACAACCAAACTCGCCTGGCAGCCTATCTGTCTGAAAAGATGGTGCTTGATTTTGGTACACATGTTATCACAAGTGTGGATGCTGGTGCTACTTTGGTAGAGGAGGACTATTTAAAATCATCTTATGTTTCTGATGCACAGTCCTCTCAGTCGTCTGTCACAGCATCTGCTGGTGCCAACTTTTTTAACAAAGTTAAATTTGATATTGGCAGTAAGGAGTCACAAGAAACATCTGAAACTAAAGCCTACCAGGGTAATATTACATACTCCATAACAATGAGTCATGGGGGGGCTTTGTTTTATCCTGGCATTACTCTACAAAAATGGCAGGAGAGCActttaaacaatttaattgCTATTGACCGTAGTGGATTACCACTAAATTTTTTTCTCAACCCATCAACATTTCCAGACCTCCCACTTCCGACTGTAAATAAACTAGCTCTGTATGTGCGTAAGGCAATAGATCGTTACTACAAAATTAATACCTATCCTGGGTGTGTTAAACCAGACTCCAAAAATTTCAACTTCCAAGCAAATGTGGATGATGCATCCTGTGAAGGTCCAAGCACCAACCTTAGCTTTGGTGGTGTTTACCAACAGTGTACTCCACTTACACCGGATGGAGATGCAATCTGCCAGGAACTCGCTGTGAAAAACCCAGCCACTGGCTCGTATAGCTGTCAACAGCCATACATCACTACACTACTGCGCTCTGAAGTGCAGGAAAGACCATATAATAATTATGAGTGCCACCAGCAATGTCATTCATGCTGGTTGTTTTTCCATTGCTGTAAAGCTGTATGCGGAAATGTGTATTATGTTCGACGTGCAAAGGTCGAAACTTATTGGTGTTCTACTAATGATAAAGCTCCAGAATTCTCTGGATATCTCTTTGGTGGTCTATTTGGCCCTTCTTTACAAAATCCATTAACCAAATCCAAATCCTGTCCTTCAAATTTCTTTGCCCTAAACTTTTTATCCAGTGGTATTATGATCTGTCTAAGCAATGACTATGAGGCAGCAACAAGATTCTCTGTGCCTTTTGGAGGTTTCTTTAGCTGCCAGTCTACCAATGTGCTTGCAGGAGGACAATCACACTGCCCACCACAGTTTAGCCAACATCTCGTTGCCATAAGCGATGGATGTCAGGTACTGTACTGCGTTCAGTCAGGCATTTTCACTGGAGGTGAGTTACTTCCCATCCACCTCCCACCCTTTACAAGACCTCCAGTGATCAGTATGATAGTCACAAACACTGTAGCTGTGATGACTGAAGGAGACCAAGCCTGGGTGAGAATCAAAGACACAAAGATGTGGAAGGTGGCCAAGCCTGAGGACATTGCAAAAATGTCCCAAATGTTTGAGGATGACTCTCAGTCACAAAGAAAAACGGTTGGCATTGCATTTGGTGCTCTAGCCTTGATTGCTCTTGTGGTGGCAGTAGCAGTGTTAGTggtgagaaagaggaagaagttTCTTCTTTTCAGAAGAAGTCGAGGCTATGAGGAGATTCAAAGTGACGGACTGTGTGAGACTACTGTAGAAAGCCAGACAGAGCAACAGTCTGAGAATCTGACTGATGATCATACTCAGAGTCTCTTGGCATAGTGTTTCTGTTCCTGTGCAATAAATACTTATAAAATGGTGTACAGCAGTAATGGAACATTATCTAATGACTATAACCTAACTGCTTTTTTCTATATTAAGCAAGATATTTTGTTATTGTActtttacatataatatatttacacacaaaatcAGATAATGAAATCAGAACACTGAACTAttgtaacatgtttttttaaaacatttaatctgATTTATAGTGATTGTGTACCTTTATCATCTACAGAAATTATGATGTATCTTGATCCTTAAATTAAGAacattttgactttgttttgtttttatt

Function

NR:

description
macrophage-expressed gene 1 protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924367.2 True 2490 mRNA 0.42 2 14266625 14269429

Neighbor

gene id symbol gene type direction distance location
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 34496 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 94832 14154858 ~ 14171793 (+)
lrif1 lrif1 coding upstream 380958 13879111 ~ 13885667 (+)
apex2 apex2 coding upstream 388665 13873546 ~ 13877960 (+)
csde1 csde1 coding upstream 398505 13838338 ~ 13868120 (+)
prf1.5 LOC108265013 coding downstream 3559 14272988 ~ 14279281 (+)
ap3s1 ap3s1 coding downstream 651714 14921143 ~ 14937444 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 808241 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 866257 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 887410 15156839 ~ 15163360 (+)
G132569 NA non-coding upstream 5970 14260279 ~ 14260655 (+)
G132424 NA non-coding upstream 16810 14249122 ~ 14249815 (+)
G132420 mapk4,LOC108265425,LOC107679920 non-coding upstream 20491 14245576 ~ 14246134 (+)
G132405 LOC108265425 non-coding upstream 32371 14233028 ~ 14234254 (+)
G132361 NA non-coding upstream 146210 14116975 ~ 14120415 (+)
G132603 NA non-coding downstream 58223 14327652 ~ 14327869 (+)
LOC117597773 grid2,LOC106580171 non-coding downstream 205213 14474642 ~ 14483736 (+)
LOC113529916 NA non-coding downstream 453001 14722430 ~ 14740962 (+)
G132959 NA non-coding downstream 473053 14742482 ~ 14744146 (+)
G132968 trim36 non-coding downstream 552553 14821982 ~ 14824363 (+)
aopep c5h9orf3,cunh9orf3 other upstream 243938 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 317817 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 475308 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 1661920 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 2036624 12196593 ~ 12230001 (+)
G132595 atoh1 other downstream 52743 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 670872 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other downstream 710404 14979833 ~ 14979904 (+)
srp19 srp19 other downstream 1109513 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1732632 16002061 ~ 16018818 (+)

Expression


Co-expression Network