LOC113533162


Basic Information

Item Value
gene id LOC113533162
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15473676 ~ 15482696 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925091.2
aagtctattgatttttggcatccggaaccccttgtctttGATTGGAAAGGAGCCAGGAGGGTCACCACAGCTTGGCAGACTGGAGGCAGATTGTACAAACAGGCCGGCCAATGAAGGAATTCCACAGGTGGTGGTGATCACTGAAAAAGCACAGATGTCCATGAGTGAGACAGTCAACTCAGAAGACAGCTGAACTGttgaaagaaatggaaaaacaggTACCAGCTAATTTGTGGTCTCAACATGATACTGATGTAGGTCTAGTAAAATCTGCTAGCCCAATTAGAATTGGGCAATATCCACTGCTGCCTGAAGCAGAGGCAAGCATTAAACAGGCTATTGAGGGACTGGTTCATGCGGGAGTCCTAGTTGAGACAGTAAGTTATTGTAATACCCCAATATTGCCTGCTGCTAAAGCTGACAAGTCAAAATGTCATTTGGTACATGATTTGTGTGCAGTTAATGAGGTGGTAGAAGATTGGCCAGCGGAAGTTCCTAACCCTCACACATTGCTAACTAATGTTCCTCCTgatacagtattttactgtaactgatCTTTGTTCTGCCTTTTTCTGCCTTTTAGCATTCCTTTGGCTGAGGAAAGTAGgcatttgtttttcctttacatATGCTGGGAAGCAATACACATATGCAAGACTTCCTCAAGGTTTCAAGCACTCACCACATGTGTTCAATCAAGTTCTTAAGGCTGATTTGGAAGATCCCATGCTAGATAGCACATTGTTACAAATCTGCTGATTTGCTCCGCCTTCTTGGAACAATGCCATACAAATTCCATTAAGGTACTTACTAAATTAGCCCTTTGGAGGACATAAGGCATCTAAAACTAAGCTACGGTACTGTCAACCACAAGTTGAGTATTTAGGGAGATTAATTGCATACAGAACTAAGGCAATTGCTCTAGCCTAGCTAGAGGGTAGTAAAGTGCCACTACCACAGACAGTAGGGCAAATGATGACCTTTTTAAGAATGACAGGATTTAGTTCTGACTGGATAGAGGACTATGCAATTAAAACTGCACCTTTGAGGGCAATCATGAAGCAAGCAGGGCATCAGAATTTGCGTTCATCACTAGTGTGGAACAGTGAAGCACTGGACAGTGTAGCACAGGGATATTCTCCATGTTACCAACAGGGACTAGCTGCCTTATACTATGCATATGAAAAAGCATCTACTGTGACTATGGGTTATCCACTgatcatttacacacatcacaatGTACTGGAATTATTAGAACAAGGGAGATTTGTTCTAACTCAGGCTAGGTGCTTACCCTACTCATCTCTCTTGACATACCCAGATATCACTATTAAGCATTGCACTACAGCAAATCCAGCTGACATGGTTCCTTTAGAACATGAAAGACAGCCTCATGATTGTGTAGCAAACTCATTGGCCTTTACACGACTTCGACCTGACTTAGAGTCCTCAGATGTTCAGTATTTTCTGGATGGTTCTTGTTTCAGAGATCATTTAGGCAATCATGCAGGGTTTTCACTGGTGAAAAGACAGAATGAGGACTTTGTGATGGTAATTTCACAGCATTGTAAACAACTTTTTGGTTTGGCATACCATCTCAGATAAGTTCTGACAATGGTTCAGCATTTGTTCAGAGGACAGTGAATACAGTGTTGCAACAATTAAGAATAAAACAGCGTTTGGGTGTGTTTATCATCCTCAGAGCAATGGTGGGGAGGGTGAATGGTACTCTTAAGGCTAAAATTAATAAGATTTGTGCTGACACGAAACTGAATTGGGATGATGCTTTGCCCCTTGCACTGATGAGTTATCGCATGCAGACCAATAGAATTACTAACCTGTCACCACATGAAATGCTCACAGGTCGACCCATGCCTGTGCCATATTTGAGAGGTCCTTATGATGGACTACCTCTGGAGCAATTGCAAATGGAGCTGAGAGCTTACAGGTGTCAACTAACTGCAATACATGAAGCTATCTATTCACAGGAACAAAGCAGGGAGCCGAGAGAAGACGCAGAAGTTCCTTATCCAGTTGTTTCTGGAGATAAAGTATACCTAAGAGTGTTCAGACGAAAGTGGAACAAGCCTAGAAGAGAAGGTCCATACACAGTGGTGAGAGTGACGCCTACAGCGGTGCAAGTGGAAGGTAATACTACCTGGTATCATTTGAATCACTGTACTAGAGTACCTAGACTTAGACCCAGGAGACAAGAACACATTCAAACTGTTGAGGAAGAGGGAGATTTAGTGGCAGCCTCTCCAGAAAGCAGTCAGGAAGAAGTagaagatgaaggagagagagaaccagaagCAGGCCCTAGTCATGAAGGGGACAGCGAACCAGGTCCAGCCCAGGCAGAACCTGAAGGAGAAGGTGAGCCAACTGTTGCGTCTGATGTTCCATCTGAAACTGATGAGCCTGCTATGCCTACTGAGAGGGAAGGAGATGAGCCATTGCCAGCTCCAACTGAACAGGCAAGTGCAATTGATCCTGGTGATTTTGATGAGTTTCTTGCTACACTTACCGCAGACTCAGACCCGTCCACTAGTCAGCAAGCAGCATTCTCCACAATTGATTTCTCAGCCCTTGATTGGCCCTCAGGCCTTGACTGGCTCACAGATGAGTAAGGACAGTAAGAGACTGGCCAACTCTATGTATTGAGGGACTGTGCGTGAGAATGACACTGCAGAAGAAATGAGGAGTGATGCGTTGCTACATATAGCACAAGATAATAAGTGGTCGAAGTGGGCTGAATACACTGCTGCTAGTTTGAATAAGGGTAATTGTTTGATATGTTCACCTCCTCCATTGAGGAGGGTTGCAGGGGTACCGACTCCATATGATTACAGACACTGTGCAGAGTACAACAGGCAGTATTGTAAGCAGAATTGGCAGAATGGACCAGACTGCTCATACTGCCCAGCTGAGTGTTTAACGTATTTAGGCAACCCGCATTATAGCACAATGCATAAGCAGGAGGCGTGGAAAGGGTGGTTCTCACAACTGGATGTTAGAATAGAGGAAAAACGTAGAGAGACACCACAGCAGTATGAAGTAGATTACACCATGGAGTATGAATGTTTTAACAAATCAGATGGAAAGCATGACATGGGTACA
>XM_026925097.2
aagtctattgatttttggcatccggaaccccttgtctttGATTGGAAAGGAGCCAGGAGGGTCACCACAGCTTGGCAGACTGGAGGCAGATTGTACAAACAGGCCGGCCAATGAAGGAATTCCACAGGTGGTGGTGATCACTGAAAAAGCACAGATGTCCATGAGTGAGACAGTCAACTCAGAAGACAGCTGAACTGttgaaagaaatggaaaaacagGAACAAAGCAGGGAGCCGAGAGAAGACGCAGAAGTTCCTTATCCAGTTGTTTCTGGAGATAAAGTATACCTAAGAGTGTTCAGACGAAAGTGGAACAAGCCTAGAAGAGAAGGTCCATACACAGTGGTGAGAGTGACGCCTACAGCGGTGCAAGTGGAAGGTAATACTACCTGGTATCATTTGAATCACTGTACTAGAGTACCTAGACTTAGACCCAGGAGACAAGAACACATTCAAACTGTTGAGGAAGAGGGAGATTTAGTGGCAGCCTCTCCAGAAAGCAGTCAGGAAGAAGTagaagatgaaggagagagagaaccagaagCAGGCCCTAGTCATGAAGGGGACAGCGAACCAGGTCCAGCCCAGGCAGAACCTGAAGGAGAAGGTGAGCCAACTGTTGCGTCTGATGTTCCATCTGAAACTGATGAGCCTGCTATGCCTACTGAGAGGGAAGGAGATGAGCCATTGCCAGCTCCAACTGAACAGGCAAGTGCAATTGATCCTGGTGATTTTGATGAGTTTCTTGCTACACTTACCGCAGACTCAGACCCGTCCACTAGTCAGCAAGCAGCATTCTCCACAATTGATTTCTCAGCCCTTGATTGGCCCTCAGGCCTTGACTGGCTCACAGATGAGTAAGGACAGTAAGAGACTGGCCAACTCTATGTATTGAGGGACTGTGCGTGAGAATGACACTGCAGAAGAAATGAGGAGTGATGCGTTGCTACATATAGCACAAGATAATAAGTGGTCGAAGTGGGCTGAATACACTGCTGCTAGTTTGAATAAGGGTAATTGTTTGATATGTTCACCTCCTCCATTGAGGAGGGTTGCAGGGGTACCGACTCCATATGATTACAGACACTGTGCAGAGTACAACAGGCAGTATTGTAAGCAGAATTGGCAGAATGGACCAGACTGCTCATACTGCCCAGCTGAGTGTTTAACGTATTTAGGCAACCCGCATTATAGCACAATGCATAAGCAGGAGGCGTGGAAAGGGTGGTTCTCACAACTGGATGTTAGAATAGAGGAAAAACGTAGAGAGACACCACAGCAGTATGAAGTAGATTACACCATGGAGTATGAATGTTTTAACAAATCAGATGGAAAGCATGACATGGGTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925091.2 True 3120 mRNA 0.44 3 15473676 15482696
XM_026925097.2 False 1350 mRNA 0.47 4 15473676 15482696

Neighbor

gene id symbol gene type direction distance location
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding upstream 9793 15454048 ~ 15463883 (+)
csgalnact1b LOC108265223 coding upstream 20933 15442500 ~ 15452743 (+)
spinb LOC108265781 coding upstream 33989 15418464 ~ 15439687 (+)
lrrc2 lrrc2 coding upstream 70952 15398272 ~ 15402724 (+)
LOC113531612 nudt12 coding upstream 109652 15357916 ~ 15364024 (+)
prxl2c NA coding downstream 416882 15899578 ~ 15905498 (+)
cdc14b cdc14b,LOC108265480 coding downstream 424833 15907529 ~ 15920012 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding downstream 440594 15923290 ~ 15927646 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding downstream 513629 15996325 ~ 16003311 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding downstream 522786 16005482 ~ 16010899 (+)
G133342 NA non-coding upstream 47304 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 71914 15401446 ~ 15401762 (+)
G133307 NA non-coding upstream 109705 15354461 ~ 15363971 (+)
G133306 NA non-coding upstream 129645 15343754 ~ 15344031 (+)
G133260 NA non-coding upstream 174289 15299184 ~ 15299387 (+)
G133386 NA non-coding downstream 114712 15597408 ~ 15606339 (+)
LOC117597798 NA non-coding downstream 147757 15630453 ~ 15640958 (+)
G133617 NA non-coding downstream 489164 15971860 ~ 15972109 (+)
G133635 NA non-coding downstream 560144 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 681990 16164686 ~ 16170597 (+)
srp19 srp19 other upstream 88852 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 490792 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 493772 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1150226 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1450989 13949937 ~ 14022687 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 519365 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 920052 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1097561 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1233437 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 1377280 16859976 ~ 16868768 (+)

Expression


Co-expression Network