vdac3 (vdac3,LOC107754399,LOC107560056)


Basic Information

Item Value
gene id vdac3
gene name vdac3,LOC107754399,LOC107560056
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 18030975 ~ 18048889 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026925794.2
AATCCAAAAGCGCGTCTGCGGAACGGCGCATGCGCAGTGTGCGTTCTCCCTGCTCCTCTGGTTTCTCCTTCAGTGTGTCCTCTCACCACCGTCCAGAAGGGAAGCGCGAAGTAGGAGCGGTACAACGGAATATACGctGGCATGGCAGTCCCCCCTGCATACTCTGACCTCGGGAAAGCCGCCAAAGATATATTTAGCAAAGGCTATGGCTTTGGAACAGTTAAACTGGACCTCAAGACCAAGTCCCAGAGTGGAGTTATGGAGTTCTCAACTGGTGGATACAGTAGTACAGATACAGGAAAAAGTTCTGGTAATCTGGAGACTAAGTACAAAGTGAAGGACCTAGGCCTGACCTTCAACCAGAAATGGAACACTGACAACACACTGACCACCGAGGTCACCTTGGAAGATCAGCTGGCTAAGGGACTGAAGTTGGCTTTGGACACCTCCTTTGTGCCCAACACTGGGAAAAAGAGTGCTAAACTGAAGACAGGATATAAGCATGACTTTGTAAATGTGGGCTGCGATATTGATTTTGACCTTGCTGGGCCCACAATTCATGCAGCAGCAGTGGTTGGCTATGAGGGCTGGCTAGCTGGCTATCAGATGGCTTTCGACACTGCCAAGTCCAAACTGGCTCAGAATAACTTTGCTCTGGGATACAAAGCTGGTGACTTTCAGCTGCACACCAATGTTAATGATGGTACTGAGTTTGGTGGCTCCATCTATCAGAAAGTGAATGACCAATTGGAGACGGCAGTAAATCTGGCCTGGACAGCAGGCAGCAACAACACCCGCTTTGGCATTGCTGCTAAATATCAACTGGACAAGGATGTGTCTATCTCTGTGAAAGTAAACAATGCCAGTCTGGTTGGAGCTGGATACACACAGACTCTGCGGCCAGGTGTGAAGCTCACTCTCTCAGCCCTGATTGATGCAAAGAACTTAAATGCTGGTGGACACAAGGTGGGCCTGGGCTTTGAGCTGGAGGTATAACGATAAAGAGAGGAACAAGAAGACAAGGGGCATAGATTGAAACTAACAGCTGACAACATGACTGCCAGTGCCACAGGtgcgccaaaaaaaaaaaaaatgcttcaccTCATTCCACTGGTTCTGTGCAaatttgtttagtttttaaGGTTTTGCTACTTTGTCAGTATTCATCCTTTAATAAACAGGATTAGCACTCATGT
>XM_026925795.2
ATCCAAAAGCGCGTCTGCGGAACGGCGCATGCGCAGTGTGCGTTCTCCCTGCTCCTCTGGTTTCTCCTTCAGTGTGTCCTCTCACCACCGTCCAGAAGGGAAGCGCGAAGTAGGAGCGGTACAACGGAATATACGctGGCATGGCAGTCCCCCCTGCATACTCTGACCTCGGGAAAGCCGCCAAAGATATATTTAGCAAAGGCTATGGCTTTGGAACAGTTAAACTGGACCTCAAGACCAAGTCCCAGAGTGGAGTTGAGTTCTCAACTGGTGGATACAGTAGTACAGATACAGGAAAAAGTTCTGGTAATCTGGAGACTAAGTACAAAGTGAAGGACCTAGGCCTGACCTTCAACCAGAAATGGAACACTGACAACACACTGACCACCGAGGTCACCTTGGAAGATCAGCTGGCTAAGGGACTGAAGTTGGCTTTGGACACCTCCTTTGTGCCCAACACTGGGAAAAAGAGTGCTAAACTGAAGACAGGATATAAGCATGACTTTGTAAATGTGGGCTGCGATATTGATTTTGACCTTGCTGGGCCCACAATTCATGCAGCAGCAGTGGTTGGCTATGAGGGCTGGCTAGCTGGCTATCAGATGGCTTTCGACACTGCCAAGTCCAAACTGGCTCAGAATAACTTTGCTCTGGGATACAAAGCTGGTGACTTTCAGCTGCACACCAATGTTAATGATGGTACTGAGTTTGGTGGCTCCATCTATCAGAAAGTGAATGACCAATTGGAGACGGCAGTAAATCTGGCCTGGACAGCAGGCAGCAACAACACCCGCTTTGGCATTGCTGCTAAATATCAACTGGACAAGGATGTGTCTATCTCTGTGAAAGTAAACAATGCCAGTCTGGTTGGAGCTGGATACACACAGACTCTGCGGCCAGGTGTGAAGCTCACTCTCTCAGCCCTGATTGATGCAAAGAACTTAAATGCTGGTGGACACAAGGTGGGCCTGGGCTTTGAGCTGGAGGTATAACGATAAAGAGAGGAACAAGAAGACAAGGGGCATAGATTGAAACTAACAGCTGACAACATGACTGCCAGTGCCACAGGtgcgccaaaaaaaaaaaaaatgcttcaccTCATTCCACTGGTTCTGTGCAaatttgtttagtttttaaGGTTTTGCTACTTTGTCAGTATTCATCCTTTAATAAACAGGATTAGCACTCATGT
>XR_003403426.2
AATCCAAAAGCGCGTCTGCGGAACGGCGCATGCGCAGTGTGCGTTCTCCCTGCTCCTCTGGTTTCTCCTTCAGTGTGTCCTCTCACCACCGTCCAGAAGGGAAGCGCGAAGTAGGAGCGGTACAACGGAATATACGctGGCATGGCAGTCCCCCCTGCATACTCTGACCTCGGGAAAGCCGCCAAAGATATATTTAGCAAAGGCTATGGCTTTGGAACAGTTAAACTGGACCTCAAGACCAAGTCCCAGAGTGGAGTTATGGAGTTCTCAACTGGTGGATACAGTAGTACAGATACAGGAAAAAGTTCTGGTAATCTGGAGACTAAGTACAAAGTGAAGGACCTAGGCCTGACCTTCAACCAGAAATGGAACACTGACAACACACTGACCACCGAGGTCACCTTGGAAGATCAGCTGGCTAAGGGACTGAAGTTGGCTTTGGACACCTCCTTTGTGCCCAACACTGGGAAAAAGAGTGCTAAACTGAAGACAGGATATAAGCATGACTTTGTAAATGTGGGCTGCGATATTGATTTTGACCTTGCTGGGCCCACAATTCATGCAGCAGCAGTGGTTGGCTATGAGGGCTGGCTAGCTGGCTATCAGATGGCTTTCGACACTGCCAAGTCCAAACTGGCTCAGAATAACTTTGCTCTGGGATACAAAGCTGGTGACTTTCAGCTGCACACCAATGTTAATGATGGTACTGAGTTTGGTGGCTCCATCTATCAGAAAGTGAATGACCAATTGGAGACGGCAGTAAATCTGGCCTGGACAGCAGGCAGCAACAACACCCGCTTTGGCATTGCTGCTAAATATCAACTGGACAAGGATGTGTCTATCTCTGTGAAAGTAAACAATGCCAGTCTGGTTGGAGCTGGATACACACAGACTCTGCGGCCAGGTGTGAAGCTCACTCTCTCAGCCCTGATTGATGCAAAGAACTTAAATGCTGGTGGACACAAGGTGGGCCTGGGCTTTGAGCTGGAGGTATAACGATAAAGAGAGGAACAAGAAGACAAGGGGCATAGATTGAAACTAACAGCTGACAACATGACTGCCAGTGCCACAGAGTAAAGGTCCTAGGAGCAATtttaaaactacttttttttcactgcactgGGTTGTAAATCCTTCTGTTTCCCTTTTGAATAGAATTTCAATTTTCTGCAAATTCAAACTGTGATTAGTACTCCAAATTTTACTGGATCAGTCTCAAAATGTGATTTGCTGGTAAAAACTCTTACTGCTGGAAAAGGGATCAAGTAAGTTGTGAATATCATCTCCTCATTGTGTTGTGTGGAAAGTCAACTTATGGAGATGACAACAGATGCCTCTGTCCTTTTTCActcacatttatataaattacttTGATTTAATTGCCATCAGACAGATAACTCTGTaatatctgtatttttgtaggaattacagacaaAGGATTCATTTGCTGTCTTTACCTTTTCTCACAGTTGCTTTACTCTGACTGTGCTGTGGTGAATGACTAGactaaaaaattaataaaattggaGATTCCAA

Function

symbol description
vdac3 Predicted to enable voltage-gated anion channel activity. Acts upstream of or within fin regeneration. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of pore complex. Predicted to be active in mitochondrial outer membrane. Is expressed in adaxial cell; musculature system; nervous system; somite; and trigeminal placode. Orthologous to human VDAC3 (voltage dependent anion channel 3).

NR:

description
voltage-dependent anion-selective channel protein 2-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0031101 fin regeneration biological_process
GO:0044070 regulation of anion transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component
GO:0008308 voltage-gated anion channel activity molecular_function

KEGG:

id description
K15041 VDAC3; voltage-dependent anion channel protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026925794.2 False 1196 mRNA 0.48 10 18030975 18048321
XM_026925795.2 False 1192 mRNA 0.48 9 18030976 18048321
XR_003403426.2 True 1536 misc_RNA 0.45 11 18030975 18048889

Neighbor

gene id symbol gene type direction distance location
polb polb coding upstream 91280 17928424 ~ 17939695 (+)
enkd1 NA coding upstream 114336 17905804 ~ 17916639 (+)
lhx2b lhx2,lhx2b coding upstream 409329 17611386 ~ 17621646 (+)
crb2b LOC108264959 coding upstream 581913 17411108 ~ 17449062 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding upstream 678385 17349316 ~ 17352590 (+)
plat plat coding downstream 39052 18087941 ~ 18118075 (+)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC106585548 coding downstream 95158 18144047 ~ 18191595 (+)
vsig8b LOC108265910 coding downstream 155268 18204157 ~ 18215143 (+)
acaa2 acaa2,LOC107671002 coding downstream 193040 18241929 ~ 18251704 (+)
rpl6 rpl6,LOC107699672,LOC107671003 coding downstream 203857 18252746 ~ 18258724 (+)
G134586 NA non-coding upstream 83013 17947331 ~ 17947962 (+)
G134557 NA non-coding upstream 129070 17901705 ~ 17901905 (+)
G134553 NA non-coding upstream 133376 17897388 ~ 17897599 (+)
G134551 NA non-coding upstream 134533 17896233 ~ 17896442 (+)
G134550 NA non-coding upstream 135044 17895711 ~ 17895931 (+)
G134598 NA non-coding downstream 25246 18074135 ~ 18084479 (+)
G134655 NA non-coding downstream 72990 18121879 ~ 18122161 (+)
LOC113533180 NA non-coding downstream 221607 18270496 ~ 18271764 (+)
LOC113533181 NA non-coding downstream 223056 18271945 ~ 18272850 (+)
LOC113533555 NA non-coding downstream 346972 18395861 ~ 18416432 (+)
G134341 NA other upstream 734092 17296111 ~ 17296883 (+)
gucd1 gucd1,LOC102792582 other upstream 1162207 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 1292991 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 1409209 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 1611466 16402748 ~ 16419509 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 387296 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 1438598 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 1776909 19825798 ~ 19902367 (+)
LOC113533164 abracl,LOC107727609,LOC107558932,LOC107553474 other downstream 2131879 20180768 ~ 20185618 (+)
LOC113533440 erc2,LOC108264953 other downstream 2173526 20222415 ~ 20442191 (+)

Expression


Co-expression Network