LOC113534124


Basic Information

Item Value
gene id LOC113534124
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13055450 ~ 13061438 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026926775.2
gctaaaaagaaaaagcagagaCTAATCAAATACATTAGCCAACAGCTTAGGTTAGTAACGTATCTGAAACCTTTTTGTGTGCATTAGAATTATTTTGTCAGTCTGATGGGagttacttttctttttttaccatATACTCTAGGTTTTGAAATTTAGATCTCTACATGGGAAGCCAATAATGAGGACAACAATGCATATTATAGCACTCCTTGTGCTTGTTCTTCATGTCCAGCAAACAGTCCCCCAGATGGTGCAGTGTTATGCCGCTTTTCGCCCAACAGATGGAACGTGCAGTAATATTTTGGGGCAAGTGCCACTTGATGATTGTTGCATGAACCCTGCATATGGCTATCAGGATAAAGGAAGTGATTGCAAGTCTTGTAGGTATGCTTCATGGACCACGTGGTCCTCCTGGAGTGCATGCTCAGTGACTTGTACTGAGGGAGTGAGGCAGAGACGACGTGCCTGTTACGGCTTAGGGAGGTGCCATGACCCTCAGCTTGTAGGAAGGATACAAACTGAACCTTGTGAAGACATCAGCTGCTGTCCGAaaaatggAGGATGGTCTGAGTGGAGTGGATGGCATCCGTGCTCAGTTACATGTGAAAGAGGAGtcaaaaagaggaagaggaccTGCTCTAACCCCCCTCCCGTATGCGGTGGTATTTGCCAAGGCAACAACGAGGAAGTCACAGATTGTGACACAGGGATTGTCTGCCCAACTCATGGCGGCTGGTCTGCATGGGGTAACTGGGGTGCCTGTGCAGGGACATGTGAAGTACAGGGGTTTTCTCCACCTCAACAGCAGAGACACAGGACGTGTACAAACCCTCCGCCATCTCTTGTACCACGTGGCAATAATTGCCCAGGCTCAAGCACAGACACTCAACCCTGCACAGGACTGCCTTTTTGTCCAGTTAATGGAAACTGGGGGGCATGGTCGGCGGTCTCTGATTGCTCTGTGACATGTGGAGTGGGACAACAGGTAAAGCAACGTAAATGTGATAATCCTGCACCCAAATATGGAGGCCATGGCTGCCTAGgagaaaacaccaaaacactTCTCTGCACTGTTCCGAAAAACTGCCCAGCGGATGGTCACTGGAATGAGTGGTCTGAATGGTCTCGCTGTGATTCACCAAACCAAAGGACAATTACATGCAAGAATAGATTGGGGAGGCGAAGGCGACTGAGAGAGTGTTTAGGCAGGGAATATGAAGGAGCTTTCTGTGATGGAGATGGTGTAGAGTTCGACCGCTGCTATGACATTCAAGGCTGTAAAGCTGGGCCTGGTCAACAAATACCAAGAGCCCTATGGTCAGAATGGTCTGGATGGAGTTACTGTAAACCTGACTGTGGAGAACTTTCAACGCAGACAAGGAAGCGGGTGTGTATACCTGACATCTCAGAGTACAGTGAGCCCCTTATAGAGATTTTCTCAGGGATCCCAGATATTACCTGTCCACCCTTGGACAAAACAGAAGAGACCAGACCATGTCTAAATCTTCCACCGTGTTAGATCAGGTATATGGTCATCAGTTGCACtcagaaatggaaaataaagtgttaaaagaaGCTTTA
>XM_026926859.2
gggaaagaGTAGAGTGTGAGACCAGCCTCAAAGCAAGtgctaaaaagaaaaagcagagaCTAATCAAATACATTAGCCAACAGCTTAGGTTTTGAAATTTAGATCTCTACATGGGAAGCCAATAATGAGGACAACAATGCATATTATAGCACTCCTTGTGCTTGTTCTTCATGTCCAGCAAACAGTCCCCCAGATGGTGCAGTGTTATGCCGCTTTTCGCCCAACAGATGGAACGTGCAGTAATATTTTGGGGCAAGTGCCACTTGATGATTGTTGCATGAACCCTGCATATGGCTATCAGGATAAAGGAAGTGATTGCAAGTCTTGTAGGTATGCTTCATGGACCACGTGGTCCTCCTGGAGTGCATGCTCAGTGACTTGTACTGAGGGAGTGAGGCAGAGACGACGTGCCTGTTACGGCTTAGGGAGGTGCCATGACCCTCAGCTTGTAGGAAGGATACAAACTGAACCTTGTGAAGACATCAGCTGCTGTCCGAaaaatggAGGATGGTCTGAGTGGAGTGGATGGCATCCGTGCTCAGTTACATGTGAAAGAGGAGtcaaaaagaggaagaggaccTGCTCTAACCCCCCTCCCGTATGCGGTGGTATTTGCCAAGGCAACAACGAGGAAGTCACAGATTGTGACACAGGGATTGTCTGCCCAACTCATGGCGGCTGGTCTGCATGGGGTAACTGGGGTGCCTGTGCAGGGACATGTGAAGTACAGGGGTTTTCTCCACCTCAACAGCAGAGACACAGGACGTGTACAAACCCTCCGCCATCTCTTGTACCACGTGGCAATAATTGCCCAGGCTCAAGCACAGACACTCAACCCTGCACAGGACTGCCTTTTTGTCCAGTTAATGGAAACTGGGGGGCATGGTCGGCGGTCTCTGATTGCTCTGTGACATGTGGAGTGGGACAACAGGTAAAGCAACGTAAATGTGATAATCCTGCACCCAAATATGGAGGCCATGGCTGCCTAGgagaaaacaccaaaacactTCTCTGCACTGTTCCGAAAAACTGCCCAGCGGATGGTCACTGGAATGAGTGGTCTGAATGGTCTCGCTGTGATTCACCAAACCAAAGGACAATTACATGCAAGAATAGATTGGGGAGGCGAAGGCGACTGAGAGAGTGTTTAGGCAGGGAATATGAAGGAGCTTTCTGTGATGGAGATGGTGTAGAGTTCGACCGCTGCTATGACATTCAAGGCTGTAAAGCTGGGCCTGGTCAACAAATACCAAGAGCCCTATGGTCAGAATGGTCTGGATGGAGTTACTGTAAACCTGACTGTGGAGAACTTTCAACGCAGACAAGGAAGCGGGTGTGTATACCTGACATCTCAGAGTACAGTGAGCCCCTTATAGAGATTTTCTCAGGGATCCCAGATATTACCTGTCCACCCTTGGACAAAACAGAAGAGACCAGACCATGTCTAAATCTTCCACCGTGTTAGATCAGGTATATGGTCATCAGTTGCACtcagaaatggaaaataaagtgttaaaagaaGCTTTA

Function

GO:

id name namespace
GO:0006955 immune response biological_process

KEGG:

id description
K15412 CFP; complement factor properdin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026926775.2 True 1581 mRNA 0.47 9 13055488 13061438
XM_026926859.2 False 1527 mRNA 0.48 10 13055450 13061438

Neighbor

gene id symbol gene type direction distance location
inavaa LOC108264883 coding upstream 60671 12985427 ~ 12994779 (+)
c8h1orf194 c5h1orf194 coding upstream 76084 12978027 ~ 12979366 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding upstream 134264 12916438 ~ 12921186 (+)
dclre1b dclre1b coding upstream 257083 12792216 ~ 12798367 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 272293 12775926 ~ 12783157 (+)
trnav-cac_9 NA coding downstream 498 13061936 ~ 13062008 (+)
trnaf-gaa_25 NA coding downstream 2612 13064050 ~ 13064122 (+)
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding downstream 52268 13113706 ~ 13134629 (+)
wasb was coding downstream 75251 13136689 ~ 13145207 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding downstream 153028 13214466 ~ 13225319 (+)
G131715 LOC108265908,LOC108442391 non-coding upstream 31604 13022216 ~ 13023846 (+)
G131721 NA non-coding upstream 49360 13003395 ~ 13006090 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 113994 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 245712 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 325928 12712625 ~ 12729522 (+)
G131930 NA non-coding downstream 212697 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 254005 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 255860 13317298 ~ 13317506 (+)
G131962 NA non-coding downstream 264066 13325504 ~ 13325713 (+)
G131968 NA non-coding downstream 304442 13365880 ~ 13368176 (+)
rbm15 rbm15,LOC107731203 other upstream 450745 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 825449 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1059598 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1341418 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1358659 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 643728 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 828966 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 888499 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1260734 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1878863 14940301 ~ 14982884 (+)

Expression


Co-expression Network