mrps27 (mrps27)


Basic Information

Item Value
gene id mrps27
gene name mrps27
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16034502 ~ 16042147 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026927175.2
GATACGATAAGAAAACAGAAGAGGCACAAACAGAAAagctaagaaatataaaaacagcgTACAGCTCCCCCCCACTAGCGTGAGATGGTACAACCCAAACATGGCTGCCTCCATCCTGCAACGCTTTCTCCTATCTGTCAGGACTCCGCTGAAATGTGTAACTCCGTGCTTAAGTGGCAGAAGATGTCTGCTCTCAGCAGCATACACAGACACCAGAGTCTGGGAGCAAAGAGAACACGACCCCCAAAACCTAGCTAAACTGGCCTCGCTTATGGACAAGACGTATGAGAACAAGCTTCCAGTTAGCTCTTTGACAATATCACGGtttgtagaCAATATATCATCTAGAGAGGAAATTGATCAAGCAGAATATTACTTATATAAGTTTCGACACAGTCCGAACTGCTGGTATCTCCGTGACTGGACCATTCATAGCTGGTTTCGACAGTGTGTTAAATATGGAGCCAGAGACAGAGCTCTGTACACACTCAAGAACAAGGTACAATTTGGAATGTTTCCAGATGAGTTCACATTTAATATCCTGATTGACTCTTACCTAAAAGATGAAGACTACAAGGGAGCCTGCTCAGTTGTCGAGGAGGTGATGCTTCAGGAAGCTTTCGACCTCCCCACGACACAGATCTTATCCCTGTTTGCCCTGAGCAAATATTTAGCAACCAAGCCGGACTTTACCTGGCAGGAGGAGAGGAACATGGGAGCAGCTCTTCTGCTGGCTGGACTGAAGCAGGAAAATTCTGTTGGCCTTAATGCTCAGTTACTTGGTCATGCACTCATTGGTAAGGTGGAGATGGCCAGAGGAATCCATGCAGTGTTTCACAACATGCCCTTGATGTGGACCACTGGTTATCTCAGTAAAGGCCTGGTTGTTATGGAGAGAGTGTGCAGTGATGCTGGAGATTTGAAATTATGCAAGGAAACACTTGACTACATGCGGGCGATACTGCAGGAACTCACATCAACGCTTGCTTCTGAAGCAGCAGAACAGGAAGCTGCAGAAAACCAGACTGTTACCATAGATGAAGATGATGGGCTTGAAAGAGCCAAACTACCACAGTACATGGCTAGGTTTAAGGAGCTGAACaagcagctacacacacaggGGAAAGTTGAGATGCGCAGTCTGGATACACTTGTGTCCATCCTGGCTGAAGAGAAACTGAAGAAGTGTGAGGAGCTAGATGTGGCTCAGTACGAGAAGAATGTGCAGGCCTGGGAAGCAGAGCGCATACAACTAGTccagagagaggaaatgatgaaaagaaaagcagaacagGAGCATTTGGCCAAGAAAACAACCCAGGCAGTTCAGTGACACTCTCTGTTTGGGCACATAGAAGGAGAAAAGAGATATTGTTATTACATGTTTGTTTTAAGTGGCATCAGCATaaaatggttttcttttttttccccacacccTGTCAAAGTCTGAccaataaaaaatacactagGATTTATCAACTA

Function

symbol description
mrps27 Predicted to be active in mitochondrion. Is expressed in several structures, including head; immature eye; neural plate; pectoral fin bud; and segmental plate. Orthologous to human MRPS27 (mitochondrial ribosomal protein S27).

NR:

description
28S ribosomal protein S27, mitochondrial-like

GO: NA

KEGG:

id description
K17406 MRPS27; small subunit ribosomal protein S27

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026927175.2 True 1482 mRNA 0.45 11 16034502 16042147

Neighbor

gene id symbol gene type direction distance location
znf366 znf366,LOC108430334,LOC107573350 coding upstream 5143 16024372 ~ 16029359 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding upstream 23603 16005482 ~ 16010899 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding upstream 31191 15996325 ~ 16003311 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding upstream 106856 15923290 ~ 15927646 (+)
cdc14b cdc14b,LOC108265480 coding upstream 114490 15907529 ~ 15920012 (+)
ptger4a LOC108265018 coding downstream 12773 16054920 ~ 16059663 (+)
loxhd1a loxhd1b,LOC108265797,LOC108430301 coding downstream 30627 16072774 ~ 16085108 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding downstream 68225 16110372 ~ 16124577 (+)
dpysl2a dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023 coding downstream 86039 16128186 ~ 16158486 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding downstream 182467 16224614 ~ 16231225 (+)
G133617 NA non-coding upstream 62393 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 393544 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 428163 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 608130 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 632740 15401446 ~ 15401762 (+)
G133635 NA non-coding downstream 693 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 122539 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 129038 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 130143 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 288433 16330580 ~ 16362249 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 15684 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 649678 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1051618 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1054598 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1711052 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 360601 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 538110 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 673986 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 817829 16859976 ~ 16868768 (+)
G134341 NA other downstream 1253964 17296111 ~ 17296883 (+)

Expression


Co-expression Network