sncaip (sncaip)


Basic Information

Item Value
gene id sncaip
gene name sncaip
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15165645 ~ 15174722 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929214.2
ATGGCCGAATTCCAAATAACACCCCACTTCCTGCCTTAGAACACTACATAGGACATGAAATAATGGCTTATCcgcactacatagtgcactaaatCTACAGCAGGAGACAATTTAAGCGCCAACCCATGTCAAATTCTTGTGCGGCTTGTGAAGTGGTTCTGAGGGAACAGCTGCAAGACCACGGGAAAGCAAGGCACAACTTTGGTCTACAAGGGCTACCTGAGACATAATGCTGACAGAAAATGGATGCTCCTGAGTATTTGGACCTAGATGAGATTGATTTCACTGATGATTTAgctTACACATCGAAGAGCATCCCAGATCTTTGCCGGAGAAATGATGGACAAGCAGAGGAGAGACAAGCTCCTGGTATCAACTGGAGTCGAAGTGCCTCCTCACACAGTGGAAGTGGAATCAAACCCACTGGAATTGCTGATGTGTACAGCAAATTCAGACCTGTTAAAAGGGTCTCACCACTTAAGCATCAACCAGAGGTTTTGGACACTGAGGCTGACAGTAAGAGTCCTGGGCAAAATGTAGAAGGAAACGATTCCCCTAAAGGGCTCCAAGCAAGTGTGAGTCCATGTGATGTTCAGGCACTCAAGTGCAAAAGTATTGGTAATGGAGCACTTTTTGGGGAACTGGAGCATTATGACTTGGACATGGATGAGATACTAGACGTGCCTTACATTAAATCCAGCCAACAAATGGCCACCCTGCCCAGAGCAGCCTCCGAGAAGCGGACCTCAGGGAGTAGTGCCACTGATAGATGTGTAGGCCTCAAGGCGTCATCTCTCGCTCATGCTGAGAACCTGAGCAGTGGTACACAGTTTTGTGTACTCCCACCCGTTAACTGGTCAGACATGAGAAAGTCAAAGTCTATGGATCCAGACTATCTCAGGGCACAAACAGTTGGATATGACCACTCGCCAGGCTCCCTGCACCGATCTATATCTGAAGCAGACAAGCTATTATCAGGCAGACCTTTTCCAGATACACCAACCCACAAGGCTGGCTCGGACACTTCTGTCAGTCAGCCTTTGTTCCATGTTCAGGGAGGTTCAGTGGGAAGGCTAGACAACAGCAAGCCTTGGAGCAGTCCGAAAGCATTTGGAGAATGTGATGAAGAAACTAAAAAGTCTCACAATATAATCAACGTTGTGCGGGAGGGCCAGATCTCACTGTTGCCTCATTTTGCAACTGAGAACCTGGAACTCATTCGAGATGAGGACAGAAACAACCTTCTTCATATCTCTGCTGCACATGGACATGCAGACTGCCTGCAGCACCTGACTTCCCTCATGGGAGAGGACTGTCTCAATGAACGCAACAACCAGCAGCTTACTCCTGCTGGTTTGGGTGTCAGGAATGGTCACCTGGAGTGTGTGCGCTGGATGGTGAGTGAGACGGAAGCCATCGCCGAACTTAGCTGCACACGGGACTACCCAAGTCTTATCCACTATGCAGCACAATATGGTCAGGAAAGGATCTTGTTGTGGCTACTACAATTTATGCAAGAACAAGCTATCTCACTGGATGAAGTGGATCAGAATGGGAACAGCGCAGTGCATGTTGCTGCTCAGTATGGTCATCTCGGCTGCCTTCAGACGCTGGTGGAATATGGCTCAAATGTCACCGTTCAGAACCAGCAAGGTGAGAGGCCATCTCAGTGTGCTGAGCGACAAGGTCATACCACCTGTGCACGCTACCTGGTGGTTGTGGAGACCTGCATGTCTTTGGCTTCACAGGTGGTCAAGCTTACCAAGCAACTCCATGAACAGACTACAGCAAGAATAGCACTCCAGAGTCAAATGCAGCTGCTATTGCAGTCCCAGGATCCCAATGGAAGACCACGATCACCCAGTTTGCTTATTCCTCCAGCTGAGACCTGGCCTGAGATGACACTTACTGCGGAGGTTACCCCTGGTGATGGGCAGTGGGTGTTGAGGCAGAGGCATGTGGATTCTGAGTCAGTCCTGCGCAAGATCTTGGGAAAAGACATTGCTGAAAGAATGGGCACCAGGGAGAAGGCGTTCCAAGAGGAGGCAGTAGAGGGCGCCAGTGGCACAGACTCAGGGATGGGGCTGGGCATAGGCCCATTACGGAGACCAGGTATGGTGGAAAGGCGGGAGCTGAAACTAGCTCGTCTTAGGCAGATCATGCAGCGTTCCCTTAGTGAATCAGACACAGACTCGTATCCCCCTGATGAGTCTAAGCAGCCCACAGGCACCTCCAGACCAGAAAGGCCAAGCCAGCTTCCCATATCAGAGAGTGAGGAACCAGTACAGTTAACCAATAAGAAGCATACCTCAGCTGCTGAGCGCAAGTTCTCATTTGCACTCAGGACTTCCAAGTCCATGGATGGATACAATCCCTCTCCAACATCAGACAACAGTGATCTTGAtcatgaaacaaaaacagacttTTCAGGGGAACTGACTGAATTTAACAATGGGCAAAAAGTCACAAGTCCAAAGAGTGCTCTTAAATCACCATCCTCTCGTAGGAAAACCTCACAAAACCTTAAACTCAGAGTGACTTTTGAAGAAGCACCAGTTGTCCAAAAGGCTGGTCAAGCAGGGGAGGTTAAAGTAGCTTCTGGTAAAGAAAAGACTTCAGAATCAGGGAAACGACCCTTTGGAACATTTCGCTCCATTATGGAAACGTTAAGTGGAAACCAGAATGGCAACAACAATAATGCTCAAGGAACATCTGTTGGTAAACACTCACTGTCAAGTTCAGCACAGAGTCCATCTGGGAAAAGATCGGATGCTAAGGCCAGTCCAGGGGGTCTGTCAAAATGCAAAACTAAGACCAGCGCTGTTTAAGTGCCTTTCTACAAGCGTGCTGTGAGAGCATTGCAGTGCcctatttttcttaaaaaatgtaGTCAAACCTTGAGTGTTTTCAGATTAGTGGTAACTGAGGTTGAAACAACATGAATGACCAGCCAAAACACTTTAAAGCAAACATTTAGAAATCCAACACTTGTGGAAATGCAATTTTTTGCAACCTaacacaaataatttttttttatcatcagtcactgtatatatgtataacaCATGGCTTCACGTGCATTCTCCATACAAATAGATAAGTGGAGTTgttaaaagtattatttaacaTCACTGTGATTTTGTACAATCATGATCTCATTTTACAATGTTTACGTATGTTActtagtgagaaaaaaaagcattcctTGCTCACAGTTGTGTTTTTAAACCCAATTGCAATGCAAACTATAGAAGTAATAGTTTAATGACTTTCTATTAGGTCTTAGTGTTAGGAAATGACAATGAATATTTATGACCACTACATTTCATTCAGAACAGTACTGCATCACATTCCTGAAACCTTTCTAGAGTGGACAGTATTAGATACTGAAAGTTCTACATGCTACATTGCTGAAAAACGTTTCCTGATTTTGAACAATCACAATTTAATTTTGTCATAATTAATTCTATGTTTTATCTGTATCTTTTTCCATTAAAccatatttatgaattataatttaaatatcatgtttgaaagaaaaaaacattattgcaACTAATGTAATCCTAAGAtgagaaataaatgcatttaactgTTAA

Function

symbol description
sncaip Orthologous to human SNCAIP (synuclein alpha interacting protein).

NR:

description
PREDICTED: synphilin-1

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929214.2 True 3599 mRNA 0.45 10 15165645 15174722

Neighbor

gene id symbol gene type direction distance location
LOC113532232 lox coding upstream 2285 15156839 ~ 15163360 (+)
prr16 prr16 coding upstream 18223 15135686 ~ 15147422 (+)
dmxl1 dmxl1,LOC107571775 coding upstream 52827 15077670 ~ 15112818 (+)
ap3s1 ap3s1 coding upstream 228201 14921143 ~ 14937444 (+)
prf1.5 LOC108265013 coding upstream 886364 14272988 ~ 14279281 (+)
snx2 snx2 coding downstream 20331 15195053 ~ 15209082 (+)
prdm6 prdm6 coding downstream 72216 15246938 ~ 15276940 (+)
LOC117595717 nudt12 coding downstream 176504 15351226 ~ 15357477 (+)
LOC113531612 nudt12 coding downstream 183194 15357916 ~ 15364024 (+)
lrrc2 lrrc2 coding downstream 223550 15398272 ~ 15402724 (+)
G132968 trim36 non-coding upstream 341282 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 421499 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 424683 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 681909 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 837776 14327652 ~ 14327869 (+)
G133220 NA non-coding downstream 34793 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 124462 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 169032 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 179739 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 226724 15401446 ~ 15401762 (+)
commd10 commd10 other upstream 182761 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 185741 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 842195 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1142958 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1216837 13890404 ~ 13948808 (+)
srp19 srp19 other downstream 204220 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 827339 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1228026 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1405535 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1541411 16716133 ~ 16737984 (+)

Expression


Co-expression Network