gpr173 (gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752)


Basic Information

Item Value
gene id gpr173
gene name gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13214466 ~ 13225319 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026929521.2
CGTCTATGTGTTTTAAATAGGGCGCCTGTGTGCGCCGTGTAGCCTCCACATCCAcacacaggaggaggaggatgagtgCACTGGGCGAAAGGACAACGATCACAGCGCTGGAGACGCGGAGATGCTTAACTCAGCAGACACATTAAACCCGTTTCAACACGAGCTGTGTGGATGTCCCTGTCACGGAGGAAAACGGCTTCAGCTCCGGTTGAAATTTCGGGAAGAAAATGAAGACTGTGAGGAAGCATCATCTTGAGCTGGAATGCTATTAGCGAGCGCCGAGGCGTTATGAACACAGTGCTGCGTACCTCAACATGACAGTGGCGCGTATCACAGGATTTTACATTAGGCTACCATAAAAGCGAAATATAGCTAACAGTCTGACAGTGcccatgtatttatttaactcTACCACAGTGCGATGGGAATATACGGCTGAGGCTTAGGCTAGCGTTTATGGAAAACCCGAAGACATGACATGCACACGAAAAAAAAGGAAACgacattttttgctttttaaatccCGTGTTTACATAAGCTAACGAGCCGCTGGCTAAACAACGGGGCTAGCTTTTCGACACGAAACAGCTTTTTTGCGTTATTTTCCCCCCAGACGTaaccattttgtttattaattcgtttttttccccatccatcTTATATTTTTCCGGTTGTGTTACTGGTAAACGAGTTGACAGTCGGTACTGGATTGCAGATTTGGATTCATGTTTGATTTTCGGAGCGAGGTGTGCCATTTGGAAAAGAACAATTTTTGCAtctttggtgtgtttttggttcTTGACAACTGCAACAAGCTCCCGTTCAGGCCTGCTGTCCAAGCCAAAGCCATTGTGTTGAGGACAAACTGGAGATTTCCAGGTGTTGTGAAGGGTCAGGAGGGGAGACATTTTTGAACGGGAGCTCCAAAGAGAACAGTGCAAAATGAGGCAATGCAGAACCAGCTTCTCCTGTTCCATGTGAGACAACAAATAGAGGCAACCACGTGGACGAAAGACAGCTCAAccggaggaggtggaggtggaggaggtggtggaggaggtgaCAGTAAAGGAGGTGTTGGTTCTAAAGGAGAGGACGAAGCTCTACAATCAGAGCAGCAAGAGGTATGGCCAACGGAAACGAGAGTAGTGATGGGTCCCACAACCCCCTGGCAGCAGTTGTGGCTACTACGGGTGGCACAGTGAATGGAGGgccttcatcagctgtgtctACCTACATCAAGCTTGTCCTGCTAGGGCTGATCATATGCATCAGCCTAGTGGGCAACCTGGTGGTATCTTTGCTAGTATTAAGGGACAGAGCCCTACACAAGGCCCCATACTATTTCTTGTTGGATCTTTGCTTGGCTGACACAATTCGGTCAGCAGTCTGCTTCCCCTTTGTACTGGTGTCCATCAAGAATGGCTCAACCTGGACCTACAGTGTACTCAGCTGTAAGGTGGTGGCTTTCATGGCCGTGTTGTTCTGCTTTCATGCAGCCTTCATGCTGTTCTGCATTAGTGTCACACGGTACATGGCCATTGCCCACCATCGGTTCTACTCTAAGCGTATGACCTTCTGGACGTGCGTTGCTGTGGTGTGTATGGTCTGGACACTGTCAGTTGCTATGGCCTTTCCACCTGTATTTGATGTGGGCACCTATAAGTTCATCCGTGAAGAAGATCAGTGCATTTTTGAGCACCGTTACTTTAAGGCCAATGACACACTGGGATTCATGCTTATGCTGGCTGTGCTTATCCTAGCCACTCACGTGGTCTACATGAAGCTCTTGCTCTTCGAGTACAAGCACCGCAAGATGAAGCCCGTCCAGATGGTACCTGCCATCAGCCAAAACTGGACCTTTCATGGGCCTGGAGCCACTGGCCAGGCAGCCGCCAATTGGATTGCAGGTTTCGGCCGGGGCCCAATGCCACCTACCCTGTTGGGTATCAGGCAAAACTTGCACAACCAGAACCGACGGCTGCTAGGCATGGAGGAGTTCAAGGCAGAGAAGCAGCTTGGCAGGATGTTTTACGTAATCACCCTGTTTTTTCTGGTGCTGTGGTCACCATATATTGTGGCCTGTTACTGGCGGGTTTTTGTGAAAGCATGTACCATCCCACACCGGTACCTCTCCACTACGGTGTGGATGAGTTTCGCCCAAGCAGGGGTAAACCCCATTATCTGCTTTTTCCTTAACAAGGACCTCAAAAAGGGTCTGCTGGCCCATTTGCCTCCCTGTTGTAGAACTAAACCTCAACTACCCCGTGAGCCTTACTGTGTCATGTAAAGacaagtgtttatttatttctgttatcatttcctttatttctctttgGGTGGGTCACAACTGGACAGTTAATATGGTTTAAAAGGTATTTGAAGATGGAGGCATGAgggatgttttcttttgttgtaaGGATAGGGAggtcatggggaaaaaaaaaacatctgctgtCATCTAAATGCtatgtcttctttttcttgCGATTAAGGGAAAGGGTTCAGGGCTAAAATGTGAGGCACTaaatcaaatacaaatatgttttGAGAAACAGTGCTATTTACTACAGCCTTGACGATGCTATCATTCTAAAGACAAAAACTGTTTTCATAACAAACTAGTGTCGGTAATGAGTGTATGAGGGTCAGAAATGTGATCgatctgtgaaaaaaattaaacatgacattaacaTTACTTCACTAATTCAGTGATCATGTACCATTAAGCTTCAAAGCTTCACTTTGACATAGTAATTTCTATTTGAAATTAtaactgctaaaaaaaatgcGTATATTACGGTAATCAAAAAAATTTGCATGTATTCTTAAAATTTTAAAGTGGCAAGGGCCAACAAAATGAGAGTTGAAATGCAAATTTGGTATGTTACTGCAAATTTTGAACATGACGGGTTAAAATATTTCCTGTAGAACACTTTGATACTTCTGGAGGTTTAGCATATAGAACAGAACTATACTCTACTGAGTTGGAGTTTAATCTTTGAAGTTTTATCCAATAATCTTGTATTGCATTTGCACTTGCTCTCATCTTTCATGATTTACCATGTTTGTCTCCCTGCTATATGTATAAATTACTTTCCACTGATGAAAGTTCTTTAATGCTGAAAATGACGAGTTCCCATATGATGTGGTTTCTCAATCCATGAGTCATACATTGATATCAAAACAGAAACCTTAAAACTTGCAAAGTTTATTTAACTCAGTTCATCATTTTTGAAAGCATTTCAAATTTTTGCCTCCTTTTGATGTTCTAGAAAAAATCCCCTAATGGGATGAATGTACTAAAAGTACTGAAACCGAGATGTCACTGAATTGAATCAGTCTTTTTGGCTGATCGTACATGATGTTTACGAGTACAAAATGACCAGTTACTTGAATCCAATTTGAACTCATAGCACTGAGTGCATAACGGCGTTTTACAGGTTAAAAGACATATGTATTACGAGAAAACGCAGAACATGTATAGTTCACTTGCATTATTAAATTCAGTGATATTCtgttataaaaacaatattgaGTGACACCCAAGAAGACCACGAGTTAGTGGATATTcggcatacagtatataatttgatttataattAGGTTGTGGTTGTTTGACTTACCGCAGCagtgacaacacacacaacaaaatatGAAACTCATGTATCAAATAATATTCATGAACAGCAAcctttgaatgaagaaaaattctGATTTTACATCACAccttgttttattaaataatgtgctAGAAACAATTGTAAGTATTAGTAGAGATACGGAATTGGGAATGGAGATGATCAGATTAATTGGCCTGATGATAATATTTTGCACACAACTTCAGAAAGTGTTGATCAGTGAAacggtttatttattttttggtttggGGGGGATGCAGTGTGGGCAGTGGGTAGAATGTTGATTGGTAGAATGATGTAGACAGAGACGCAGCGATTGTAATATTTAGCTGAATGTTACAGAGAGCAGGAAGTTGACTTTTTTTATGAGGTAGTCAGGTTCAGTTTGGGATGGTTTAATTCCTTTCTGCTCCAGTTTTTTGCAagatcaaataaacaaaagaaacaaaacagaatatCAGGAAAACGAATGACATCTACACCAAGAGCTAAATCCACCCATCCACTACTAAAATGGGGAGAATTCTTATTGTTATTTGCATCTATTGCCTTAGTCTCTTATGAAGGTTTAATATTACTGATGTAAGGAGGATCTGACAGCTCTATGCCTCTAAAGACTTTGAGGGGTGGGGGGAGAAATGAATGCTGGGGAAAAACAACACTGTGTCTTTGCTGACTATTGGAGGACATTCTTCACTCCCCGTCACAACCATACAAACTGAGGTcaagaagaaaaatgcatcaAAAGGGCACTAAACTAGCTGGAAACTAATTGCCAAATTGTGACACTAATGTGTACAGTTTTGCACAGTTCAATGGAAAGACTTGAATTCCAAAACATGATTTCCAAGTGGAATTAAAAGGAACTTCCTTCATCCTTGTGGAATTCTTTAAGACATTTTtgggtttggttttgttttgtttttccttcttctttgaATCTTTGAGGGTGGGAGAAAAGGATGCAAGTGAAGGTTGGTGATATTGTGTGTATTCATATGTTGAAaggatcagaaaaaaaagaagtgctCATATTGGTGTTTGGGAGGGAGGGCATGTGGGTGGGAAAAAAGGGAGTGATTTTTTTGTAACAAGCAAAAATGCCTGGTAGAACATTTTTAGTTGCTTCAGGCATTCTATCTTTTGTAAAATAACTGTGACCTCTGTGTGATTTCCTGTGTATTATATGGACTATGGACTAACGTCAAACTGGGGGGAGGGAAAGGGATGGACTCTTGGTTATCATCTTTTTACCACGCATGTGTGAGTGATTGTTTATGCCAAGTATGAATGTGGGAGAGGACTTGGGAAAGGGGGGGAGGGGCTGCTAGGGATGAAGCCACATTAAGCATGGCATGGTCAGAGATGGATAGCCTAATGAAAAATGTCACTCCTACAGTTGATCAAGTTCACTTTTCCTTTCCAATGCATATTTCTCTCAAATTGGTAAATTGTAATATTGATTTAATAAGTAACCTTAAAAGGAAATTACTCAGTGAAACATATTCAAGAGATTTAAgcaattatgtatttttttttagataaaacaGCTAAAAAGTGGTATAGTACAGTAGTGCTTAGGAAATTAAGCCAATGTTGCAGTTAACAAAACGTACAATTAACCTAAAGCTCTCATCTGCTCTCCATTTGAAGAGGGTTTCAAAATGGTAGGACTAGTATTAACTGATGAAAAGGTTAATTTACTTAATGATTCTTAAAATACCACAAGGTCCCAGAGAAGGTAACTAAAGTGGTAGCTTGGTGACTTGTAACACCGTTCTATAAGTATCTATGACATATATGAAATATTTGCTTAAAGGCATAATCTTAATCCAGTATGTGACATTTCTAGTTGCTACAAGGCTGTAAACTGCACTATTCCCACAACTGTTATCTCTAATTGTCTGCCAGTTGCATTGTCACACTGATTAcaggaaataaatgaaagaataactgaaatgcaaatgaaaagaaCGGAATATTATTCACAAACGAATATTTATAGGCTTCAGAtgtggtttaaattaaataGTGTTAGTGCAAAGTTCGCGAACACGGTTTAAGCATACGCTGGGTCTAAATTACCATAATGGTTCACTATtaagtttcattttcattctagCATGAAGTTCAGCTGTCTTTGAGTCTTGCCCTTTTGCTCAAAGTAAATTGGATTTTTAAGTGAACGTTTCTGGCGCAAAGTGCATAACAAAAACACCAATGCACAACGTGGTGTTGACATGCTTGTCAAGCTCAGCCTGAGATATGACATCCGTTTTCCGCATTTGTATATCTCTAATTTGATTTAAAAGTCAGCAAATCTCCATATCGGTATGAATTAAGTGCCTGTCTTGGTTGATTTCAAAACTTCTCTTATATTTGTTTCACCATTCTTTTGATGTGTTAATTGTGCCAAATACACAATTTCATGTGAGATCATTTTCTCttcaaataacaaaaatatacttcaaaGAGATTTTAGTAACTTGTATACCACAAAGGCTGAAAATGTGAATGAACTAATGAGAcatgacaaagaaagaaagagaatgctCAGTGATGATACTGCACTGATTGAGATATTTCTTTGATCAACTACGGAGTCACATTTTTCATGAGTGTatgataaatgaaaagaaatgagaggggaaaaaaaatgagcgAGAATGTCAAGTTCAATTTCAGATTCAGATAACTTGTTCTGTAAATTAAAGGGTTTTCCCCCCTGACATGACAATAAAAGTTTACTTTTGGTGCG

Function

symbol description
gpr173 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and pleuroperitoneal region. Orthologous to human GPR173 (G protein-coupled receptor 173).

NR:

description
putative G-protein coupled receptor 173

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04300 SREB3, GPR173; super conserved receptor expressed in brain 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026929521.2 True 6399 mRNA 0.40 2 13214466 13225319

Neighbor

gene id symbol gene type direction distance location
wasb was coding upstream 69259 13136689 ~ 13145207 (+)
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding upstream 79837 13113706 ~ 13134629 (+)
trnaf-gaa_25 NA coding upstream 150344 13064050 ~ 13064122 (+)
trnav-cac_9 NA coding upstream 152458 13061936 ~ 13062008 (+)
LOC113534124 NA coding upstream 153028 13055450 ~ 13061438 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding downstream 84571 13309890 ~ 13352603 (+)
trnae-cuc_18 NA coding downstream 144229 13369548 ~ 13369619 (+)
tpd52l2a tpd52l2 coding downstream 147173 13372492 ~ 13386385 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding downstream 238812 13464131 ~ 13489999 (+)
emilin3a LOC108265066 coding downstream 298402 13523721 ~ 13541674 (+)
G131715 LOC108265908,LOC108442391 non-coding upstream 190620 13022216 ~ 13023846 (+)
G131721 NA non-coding upstream 208376 13003395 ~ 13006090 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 273010 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 404728 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 484944 12712625 ~ 12729522 (+)
G131930 NA non-coding downstream 48816 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 90124 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 91979 13317298 ~ 13317506 (+)
G131962 NA non-coding downstream 100185 13325504 ~ 13325713 (+)
G131968 NA non-coding downstream 140561 13365880 ~ 13368176 (+)
rbm15 rbm15,LOC107731203 other upstream 609761 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 984465 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1218614 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1500434 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1517675 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 479847 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 665085 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 724618 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1096853 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1714982 14940301 ~ 14982884 (+)

Expression


Co-expression Network