ptger4a (LOC108265018)



Basic Information


Item Value
gene id ptger4a
gene name LOC108265018
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16054920 ~ 16059663 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026930126.2
TCCCCGTGCGTcgcagaaaagaaaagaaagtaagaaattTTTACTGTCTTCTTTCGTGagttttctacttttttttcacacagttGATCAACTCAGTATTCCGGTTACGCAAAGACAAGTTTCGTCGCGCGCAATATCTGCGTGCTTGTGAAAGAAAGCGCCACCACAGCGCACCGGGAAAGCAGAAGAGGCGCGTCCAGAATGTACAACGGCACTGGTTCTCTGTTAAGGATGGAACCCACTGTCCCGGTGGTCATGTTCATCTTCGGTGTGATAAGCAACCTGATCGCCATCGTCGTGCTGTGTAAATCCAGGAAAGAGCAGAAGGAGACGATATTTTACACGCTGGTGTGCGGCCTCGCGGTCACGGATCTTTTGGGCACGGTGCTCGCGAGTCCTGTCACTATTGTCACGTACGTGAAGGGCTCGTGGCCTGCGGGAGAGCCTCTGTGCCAGTATTTCGGATTCGTCCTGCTCTTCTTCTCTTTGGCCGGCCTGAGCATCATCTGTGCCATGTCTGTGGAGAGGTATGTGGCCATAAACCACGCATACTTCTACAACCAGTATGTTAACCAGAGGCTGGCGGGCGCCACGCTGGTCGCCATCTACGTCTCCAACGGTGTTTTCTGCGCCCTCCCGAGCGTGGGCTTCGGCCGGGTCACCATGCAGTATCCGAAGACATGGTGCTTCCTAGATTGGAGGACCGAGGAGAATATACATGCCGCCTTCTCGTACATGTACGCCGGTGTCAGCGTCGTCCTCATCCTGGCCACAGTCATCTGCAATGTGGCGGTGTGCGGCGCGCTGATGCGGATGCACCGCAGGTTTGTGCGGAGGATGTCTCTGGGCAGCGATCAGGGGAGAGCCACGGAGATCGGCAGGAAGCGCAGCTGTAGGCGCCTGGCAGGAGCCGAGATCCACATGGTCGTGCTGCTCATCGCCACATCTGCCGTAGTGCTCGTGTGCTCCATTCCTCTCGTCGTGCAGGTGTTCATCAACCAAATATATAAGATTCCAGTGGAGAAAAGGTTGGACAAAAACCCAGATCTTTTGGCTATACGATTTGCTTCAACCAACCCCATTTTAGATCCATGGATCTACATACTACTCCAGAAAGCGGTCCTCATCAAactcacaaaaaacatcaatTATCTGTTCTGCAAGATCATTGCTCGTGGGCAGCAGAAACAGGCCAATTTCCACTGGCTGGAGCGACAGCGAATGTCCTCCATTATCTCCAGAGACTCGCTATCACTTGTGTCTCAGAATATGAGGGAGGTCAGAAGCACTTCACagacttttctttatttctctgcaATAAATGAGCCTTACAAAGACACCTGCAGTTCAAGCTGCATTAGGTCCTCTCCATATTCTTCCAAACACCTTGGCTCAGTGTTTACCAACAGGAACCATTCAGAGAGTGAGGCAGAAACATGCCCTGTTAACCACACAAGTCATCCTTCATGCTTAAAAGAACCAGATCCACAAATGACATTAACTTTGTGAATTTCCAGGTGAAAAGTATTTAGTGCTAAAAAGCCAGGTCCGGTGGCATCTGTGAGCCTGTTTGCATTTATaagtatttttgtttaattgcaTTTGTAGCATTTTAATGGCAGCTGTAACATGAGTTTTTAACAAAGGATATTTAGAACCAGTCATGTCCTACACTACAAATAAAACTCTCAAATACTCTGAAAATCCCTAGCTACAACTACATACTAGCTACATACAataatgatacatttatttttccagcAGGGTTCAAACTGGTCACAGCATGATCAGAAATAAATTGTGCACAAACAAACCTACCAAAAACGTTTGTCTTAAAAATCAGGGTGGTAGTTTTTGAGCGTTCCACTTCCCAaagaaatgttattttcttGCATAAATGTATGTGAGGtgcaatgtaactataatttaAGCCCCAGTAAGCATGGTGATAAACTCAAAACATCCTCTGCAAAAGAATGTGTAAGGATGTCATGAGAATGAGAAGCTCATATTAGTagaatatatgtaaataaaatttatgatTTTCTTCCTTGTTCTTAATCATCCTATATATTGTaaattttcaataataaaaatagaaaaa

Function


NR:

description
PREDICTED: prostaglandin E2 receptor EP4 subtype-like

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0033077 T cell differentiation in thymus biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004957 prostaglandin E receptor activity molecular_function

KEGG:

id description
K04261 PTGER4; prostaglandin E receptor 4

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026930126.2 True 2104 mRNA 0.46 2 16054920 16059663

Neighbor


gene id symbol gene type direction distance location
mrps27 mrps27 coding upstream 12773 16034502 ~ 16042147 (+)
znf366 znf366,LOC108430334,LOC107573350 coding upstream 25561 16024372 ~ 16029359 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding upstream 44021 16005482 ~ 16010899 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding upstream 51609 15996325 ~ 16003311 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding upstream 127274 15923290 ~ 15927646 (+)
loxhd1a loxhd1b,LOC108265797,LOC108430301 coding downstream 13111 16072774 ~ 16085108 (+)
bnip3la bnip3la,LOC108265827,LOC108430339,LOC107671016,LOC107552154,LOC107699644,LOC107560275 coding downstream 50709 16110372 ~ 16124577 (+)
dpysl2a dpysl2a,dpysl2b,LOC108266046,LOC108430340,LOC107713031,LOC108277094,LOC107671020,LOC108427246,LOC107678023 coding downstream 68523 16128186 ~ 16158486 (+)
tmem230b tmem230,ct030,LOC101077900,LOC106579885,LOC105894893,LOC103023473 coding downstream 164951 16224614 ~ 16231225 (+)
igsf9b LOC108265804,LOC108430342 coding downstream 172438 16232101 ~ 16270087 (+)
G133635 NA non-coding upstream 11881 16042840 ~ 16043039 (+)
G133617 NA non-coding upstream 82811 15971860 ~ 15972109 (+)
LOC117597798 NA non-coding upstream 413962 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 448581 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 628548 15425189 ~ 15426372 (+)
G133721 NA non-coding downstream 105023 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 111522 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 112627 16172290 ~ 16172533 (+)
G133842 NA non-coding downstream 270917 16330580 ~ 16362249 (+)
G133890 NA non-coding downstream 379603 16439266 ~ 16440523 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 36102 16002061 ~ 16018818 (+)
srp19 srp19 other upstream 670096 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 1072036 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 1075016 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1731470 14322172 ~ 14323450 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 343085 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 520594 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 656470 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 800313 16859976 ~ 16868768 (+)
G134341 NA other downstream 1236448 17296111 ~ 17296883 (+)

Expression



Co-expression Network