wasb (was)


Basic Information

Item Value
gene id wasb
gene name was
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13136689 ~ 13145207 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026930223.2
GTCAGTCAGCAGATTACTTGAGGTTGTGTGTAGTTCCTTGTTTAAGCTATAGCTTGAGACTACCCAGGCCTCACGGAACAGATACACACTGTGGTTGCTCTTCCtgttcactaagactgacatcATATCACAGAACACGGAAGTCCCAGTTCCCCAACCTCTCGCCCATCTCAAACAAATATCTAAATTTTAGTACAGCCAACGTGGACCAAGTCAGGGCACTACCCTAGGGTCCGATTGTATTTTCACAGGGAGGAGAGATGAGCAAGGGGAAGGCTAAAGGGCAGGAGAATGTGCCCAGCTCACTCCTCAGCATCCAGGAGAATGAACGTCTGGTGGACCTGCTGGGCCGGAGATGTGTGactctGGCCACTGCTGTTGTGCAGCTCTATATGGCCCTTCCCCACAGTCCAGCCCACTGGAGTCTACAGCATACCGGAGTGGTGTGTTTTGTCAAGGACAACCCACGCCGTTCATACTTCATCCGCCTTTATGATATCAAGGAGGGGAAAATGATATGGGAGCAAGAGTTATATACCCAGATGACTTACTCCAGTCCAAAGCTGTTTTTTCTCAGTTTCCCAGCAGATGATTGCCAAGTGGGCCTAAACTTTGCAAGTGAGCAGGAATCGGAGCTGTTCAGAAACACATTAGACGAAAAGCTCAGCCAGAGAGTCAATCGCCAAGaaaaaagacagaatgctCCAAGTGAAGAAAAACGAGCACTACCACCCACACCACCATCAAATGGTCCACTGATGCTGCCAGGTGGCATGGCCACAATAGATATCCCAAACCCAGACATTTTGGCCTCTCGGTATCGATCCCCTAATGTCCCCGTGCCTGCGCCTGCTTCCTTTGGCAAAggaaaaaaggacaagaagGGCAAGAAGAAAGGACCTCGACTTACCAAGGCAGATATTGGAGCACCCAGTGGTTTTATGCACGTCACACACGTAGGATGGGATCCAAACACTGGTTTTGATACCAATAATCTGGATCCAGACctgaaaaaactgttttcttgTGCTGGTATCAGTGAAGACCAGctgacagacaaagagacatcCAAACTTATCTATGACTTCATTGAGCAGTCTGGTGGCCTGGATGCTGTCAAAGAGGAGATGAGGAAGCAGGGTGCAACGGGTCCTCCATCTCGGAGTATCCCCCCAGTCCCAAGTGGTGCACCTGCACCCCCTCCACCTCGTGGCCTTCCTCCCATCCCTGGCCAACCTCCACGAGCTCCTCCATCCCGTAATCAGAGAACTCCACAACGTGGACCCCTTCCACCACCTCCTCCCACTGGAAGAAGTGGACCTCCacttcctccacctccctctggTGGTTACTCAGCTTCCCCACCACCTCCCCCCAGTGCTCCTATGGGTGGAGGAGGaacacctccacctcctcctccccctccccctcctccacctcctgctCCTGCCATTAGCTCTAACAGCAGCAGCCCGGTCAGCCCTTCTCCTTCAAGTTCAGGAGGCGGCAGAGGAGCTTTATTGGACCAGATACGACTGGGCACCAAGCTAAAGACTGTTACAGAGAGTTCCGATCCTCATCCTTCATCACAAGATCAGGGTGGTGAGGGCATCGTTGGAGCTCTGATGATGGTGATGCAGAAAAGAAGCAAAGTCATTCATTCCTCAGatgatgaagaagatgatggagttgatgatgaagatgatgatgaatgggATGACTAATGCCAATATCCATCTCTGGTATACACACCCTTGtgtatacatacaaacacacacacagacacacaaacacatgcacacacaaaatgatGCATTCATTTTGGGTACTGCATATATAGGTTACAGTAGGATTTCCATGGTGACAAGGTGAGTAGTGGAGAGGCAGAACGAGGAAGAAAAATGTTAGTGTATATTGTCAGTGCTGAATGAAGTGGGATGTTAAACATGAATAATCTTAACCCTTTAATTTGTGGGTGTCTCAGTAACTGTTTGTAGGTACCTCAGTTCGTTATCAACTTAAAAATTATATGCAACATGATTTTATACAAACCGTCATGATAGTGTAAAACTGTTAAAACCAGTATAAtagcaaaatacattttttgtcacaaaatatcaaatacaaaGTGTCTAAAATTGACAATAGACTATACACAATGCGGTTTACATGTAAATTGTTAATTGGTCAATCATTTTTTCAATCATCATATTTGTTGGTGATAACAAATATAAGTATTATTAAAGCTGAATAAAGCAAACTCTTTGTGCAATCTGTGAAAA

Function

symbol description
was Enables SH3 domain binding activity; enzyme binding activity; and identical protein binding activity. Involved in several processes, including Cdc42 protein signal transduction; positive regulation of nucleobase-containing compound metabolic process; and regulation of actin filament organization. Located in several cellular components, including actin filament; cytosol; and site of double-strand break. Implicated in Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; and thrombocytopenia.

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein isoform X1

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0030595 leukocyte chemotaxis biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K05747 WAS; Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026930223.2 True 2282 mRNA 0.47 12 13136689 13145207

Neighbor

gene id symbol gene type direction distance location
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding upstream 2060 13113706 ~ 13134629 (+)
trnaf-gaa_25 NA coding upstream 72567 13064050 ~ 13064122 (+)
trnav-cac_9 NA coding upstream 74681 13061936 ~ 13062008 (+)
LOC113534124 NA coding upstream 75251 13055450 ~ 13061438 (+)
inavaa LOC108264883 coding upstream 141910 12985427 ~ 12994779 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding downstream 69259 13214466 ~ 13225319 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding downstream 164683 13309890 ~ 13352603 (+)
trnae-cuc_18 NA coding downstream 224341 13369548 ~ 13369619 (+)
tpd52l2a tpd52l2 coding downstream 227285 13372492 ~ 13386385 (+)
si:dkey-70p6.1 si:dkey-70p6.1,LOC108265141,LOC108437573,LOC107731205,LOC107668067,LOC107745762,LOC107549992,LOC107549481 coding downstream 318924 13464131 ~ 13489999 (+)
G131715 LOC108265908,LOC108442391 non-coding upstream 112843 13022216 ~ 13023846 (+)
G131721 NA non-coding upstream 130599 13003395 ~ 13006090 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 195233 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 326951 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 407167 12712625 ~ 12729522 (+)
G131930 NA non-coding downstream 128928 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 170236 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 172091 13317298 ~ 13317506 (+)
G131962 NA non-coding downstream 180297 13325504 ~ 13325713 (+)
G131968 NA non-coding downstream 220673 13365880 ~ 13368176 (+)
rbm15 rbm15,LOC107731203 other upstream 531984 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 906688 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1140837 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1422657 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1439898 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 559959 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 745197 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 804730 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1176965 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1795094 14940301 ~ 14982884 (+)

Expression


Co-expression Network