prxl2c


Basic Information

Item Value
gene id prxl2c
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15899578 ~ 15905498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026941200.2
CTTCCGGTATCGACACTACAAACGGAAGTCCCGCCTCAGCCGACGAAAGTTAAGCACAATTGTAATTGGTGAAGCAAGCTGTCTGTATTCTCACGGTTCCGGttttgtggagtgtgtgtgtgtgtgtgtgtgtgagagagagaatgtgtcaAGTGGTGTAACTAACACAACAGCTGATGGTGTAGAGCAGTAAAATGTGTACACATCCTTTACTCCACTTGTATTTTTTGGGAATGTTTGACTATGCTAGCGTGTGTGCGGAGTACCATGAGCTGCTCCAGTCGGTTTTTTCCCGTGTGGAAATACATTGTGAATACTTTTGAGAACTGACACTTTGAGTTGGGTTTCAGTATAAAGCGCTCTGTGGTAGAAAATGTgtgttggtttaaaaaaaaaaaaaacaggatgggCGTCCTCCCCTGAAGAAAATGCCAGAAATAGCATGGGCTTGGCTCCGGCTCTGGGAAAGTGCTCCACACAGCAGGAGAAATGGCTGCCAGTTTGCCAGTAACGCAGCAGATCTGCAGCTCTGGACCCCCGGCTTCTTCAGCCACATGTGCCATTCCCATCGCAGAGCTGGACGACTGCCTCATCTACGATCGGCACGGGGTCTGCGTTACTTTTAAGAGCTTATACCAAAACCACAAAGCTATCATTATTTTTGTGAGGAATTTTTTGTGCTACACATGTCAGGAATATGTTGAAGACCTAAGCAAAATACCAAAGCAAATGTTATTGGATGCAGATGTCCGTCTTATTGTCATTGGGCAGTCAGGCTATTCCCATTTAGAGGCATTCTGCTCGCTGACAGGCTATCAACATGAAATTTATGTTGATCCAGAGCGACATATTTATAAGAAACTTGGGTTGACAAGAGGGGAGATCTATGGGGAAacagGCTCTCAAAGCCCACATGTGAAATCCAGCATACTTGTTGGCAGTATAAAGAGCATGTGGCGAGCCATGACCAGTCCTGCCTTTGATTTTCAAGGAGATCCTCTCCAACAAGGGGGAGCACTCATCATTGGCCCAGGTCCCAACGTTCATGCAGCACATTTTGACATGAATCGATTTAACCATATGCCCATAAACAGGTTGCTTCAGCTGGCTGGAATGCAGGTGGTCGACTTTAACAGACATGCCAAGATTATTGACATATGAGAAAGGAGCCATTTCACTTTAGATCTGCACTCAGCTTTTAAACAGGGTTTTAAAGAGCACCTCTTTGTTAGAATGCATTCATAAAGAAGACATAACAGCAAATCTACTGAGATCTGACGAGACTTCTTTGATTATATTCTGGGATAATCTGAACCCCATACCATTTCCAAAACCTGATCCACAAATCCTAAGCCTACAGTTAACCTCTGTGGATTAAAAGGGAATCAAATTCATCCCTCACTCACGCACTCACGTTTAGTGACCGCTTTATCCTCATCggggtcgcagtggatccagagaTTGTTCTGGCAACacggcgtgaggcaggaatacaccctggattgaACACCAGTCAGTCACAGATTCATCCCTTAGTAACTAATTTTGCATTCTCTGAATGCAGAATGATGCTGAGGAATACAGACCTGgcttattatttatgtttttttagtaAACATATTCAAAACATAGACATAGTCTGTATATCaacatacagttgaggtcaa

Function

NR:

description
C1orf93 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026941200.2 True 1667 mRNA 0.44 6 15899578 15905498

Neighbor

gene id symbol gene type direction distance location
LOC113533162 NA coding upstream 416882 15473676 ~ 15482696 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding upstream 435695 15454048 ~ 15463883 (+)
csgalnact1b LOC108265223 coding upstream 446835 15442500 ~ 15452743 (+)
spinb LOC108265781 coding upstream 459891 15418464 ~ 15439687 (+)
lrrc2 lrrc2 coding upstream 496854 15398272 ~ 15402724 (+)
cdc14b cdc14b,LOC108265480 coding downstream 2031 15907529 ~ 15920012 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding downstream 17792 15923290 ~ 15927646 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding downstream 90827 15996325 ~ 16003311 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding downstream 99984 16005482 ~ 16010899 (+)
znf366 znf366,LOC108430334,LOC107573350 coding downstream 118874 16024372 ~ 16029359 (+)
LOC117597798 NA non-coding upstream 258620 15630453 ~ 15640958 (+)
G133386 NA non-coding upstream 293239 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 473206 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 497816 15401446 ~ 15401762 (+)
G133307 NA non-coding upstream 535607 15354461 ~ 15363971 (+)
G133617 NA non-coding downstream 66362 15971860 ~ 15972109 (+)
G133635 NA non-coding downstream 137342 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 259188 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 265687 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 266792 16172290 ~ 16172533 (+)
srp19 srp19 other upstream 514754 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 916694 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 919674 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1576128 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1876891 13949937 ~ 14022687 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 96563 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 497250 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 674759 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 810635 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 954478 16859976 ~ 16868768 (+)

Expression


Co-expression Network