prdm6 (prdm6)


Basic Information

Item Value
gene id prdm6
gene name prdm6
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15246938 ~ 15276940 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947487.2
AGCAGAAGGAgggcagagagagggagagagagagagggagagagagagagagagagaagagatgacGGCTTCTCTTTTCTCCATCCACAGACTTCACCAAGTGTCTCGGCGCTCAGGAGCGTTATGGTGTAAGCGTCCGGGACTCGCAGTTGACAGCGGTCGGCTCTGACAAACTCGCTTGTGCTAAGAAGttGCAGTTGGAAATGCTGAAGCCGGGGGATCAGAGCGGTTCTGCTTTCCTTAAAGTGGATCCGACTTACCTTCAGCACTGGCAGCAGCTTTTCCCGCAGAGTCAGCTGAAGAACTGCGCAATTCCGCAAATCCCGGCGCCCGATCGAGCGCCTGTAGCAGCGGAGAGCCTGCGCCAGAGAAGCGGGTTAATCTCCTCCACCAGCGCCTCGGCCGCTTTAACGCCGTCCTCGAGCTCGTCTTGCGCTCCTGCCGTGTCCGCGCTCGCGGGCTTAACGCAGCTCTCCGCGCCGCAGCTCGCGCTGTTCGGACACTCTCTCTGTACAGAGGTCGCAGCGGCGGAAAACAGCGGCGCGTCTCAGCCCAAGGAACTTTGCCTGCAGTCCAACTTTAACGACAAAGCGTCCCGGTTGAAGCTGACCTCAGAGGAACTGGACTACTATCTATACGGACAGCAGAGGATGGAGATTATCCCACTGAACAATCACACCAGTGATCTCAATAACCGCTGTGACATGTGTGCAGATAACCGGAACGGCGAGTGCCCCATGCACGGGCCCCTGCACTCGCTGCGGCGCCTGGTAGGGACAAGCAGTGCAGCCACTGCTGCGCCCCCTCCAGAGGTTCCCGAGTGGCTGCGTGACCTGCCCCGCGAAGTCTGCCTCTGCACCAGCACAGTGCCAGGCCTGGGCTATGGTATCTGTGCTTCCCAGCGCATACCACAGGGCACTTGGATTGGACCTTTTCAGGGTATTCCTCTGCTGCTGGATAAGGTGCAGTCAGGAGCGGTGCGCAACACAAGACACTTATGGGAGATCTATGACCAGGAGGGCACGTTACAGCACTTTATTGATGGCAATGATCCAAGCAAGTCAAGCTGGATGAGGTACATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTGGTTCAGTACAGATCATGTATTTTCTACCGGGCTTGTATGGATATTCCACGAGGAACAGAGCTTCTGGTCTGGTACAATGACAGTTACACCTCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAGGATGAAAACTTGAATGTGCCATCTACTGTAATCGAGGCCATGTCCCGACAAGAAAGCCTGCAGCCTTTCAGCAAAACATCCAAATCCTCTACAACTGTCATGCTGCAGCGCTCCATGGTTTTCCCTCACTCACCCTGCTCACGGAGCTTCTCTCTGCTGGACAAGGTGGGCAACATGGAGTCTGGCTTTAGCCAGCTGAACACCAAGAACCAGCGGGTTCTAGCCAGTCCCACATCCACCAGCCAGCTTAACAGTGAGTTCAGCGACTGGCACCTCTGGAAGTGTGGCCAGTGCTTCAAGACCTTCACACAACGCATTCTTCTGCAaatgcatgtgtgcacacaGAATCCAGACAGACCATATCAGTGTGGACACTGTTCACAGTCCTTTGCCCAGCCCTCAGAGCTGCGCAACCACGTGGTAACACATTCCAGTGACCGGCCCTTCAAGTGTGGCTATTGCGGCCGTGCTTTCGCCGGAGCCACGACGCTCAACAACCACATCCGCACCCACACCGGGGAGAAGCCATTCAAGTGTGAGCGGTGCGAGAGGAGCTTCACGCAGGCCACACAGCTTAGCAGACACCAGCGGATGCCCAACGAGTGCAAACCCATCAGCGAGAGCAGCGAATCAATTGAGGTGGATTAGTTGATTGACCATGCCGGAATTAAACGGCGAGGGAAAGTCATGATTAAATGTCACGGACACTTAAGCAAAACCAAAGATTTCCACTGAGAAACTCTCAATCAGCCCCAGAAAACCAAaagcagtaataaaataagtaaGATGTTAAGAGATATTGATCCTGACACAGATAAGGGACTGGTTGTGGCTGGGGTGGGAGGTTGGGGGGAGGACaagattatttattcatgacTGGGAAAGTCACAGTTCTCTTAAAAAGCTGGAACATAAGTGTGAAATGCCAAAAACATGGCTTATCGCTTTATTTCTTAGTCATGAACATTGTACTATAAAACCAAAGGGAGAAGACTAAAAGGGGTGCAGGGACATACCCCTCAAACTGACAATGCACAGTATCTGTATAATTGCACCATTTAATAAGCAGGATTTTTTGAGAGAAACATTTGTATTCACCAAAAAAATAGCTTctgtataaaatgtacattttgaatTATATTTCTCTCATATCATGCTTTTTGGCACTTTTGACTggtattatttaatatttcatttggaTACTGATTCTAAATGTAATGATGGAGACTATTTAAATATGAGCGGGACGAAAGGAAAAACGTccttgtgaaataaataaaaaaaccttgTTACCAAATATGAAATGAAGAAGAGTTTTAAAGCAATATATAGAATTGTATCTGTTGTGTCATTCAATACTTTTATTGCCACACTCATTTTATATGGTGAGTGGGGCTACTGAATGTTGCattttgttacaaaaaaaatatttaaaatcatttcacCATTACTAAAGGCAAACATTACAGTTTTGTTTGTCAGGTTTTATGGGAAGGTaatagtaattatatatatacatacacacatatatatatatacacacatacacacacacaccctgatcagctataacattaaaaccattgacaggtgaagtgaataacattaattatctcgttacaatggcacctttCAAGGAGGGGAATATTtcaggcagcaagtgaacagtcagttcttttgatgtgttgatgtgttagaagcaggaaaaatgggcaagcataaagatctgagcgactttga
>XM_026947559.2
CCGCCACAGCAGAAGGAgggcagagagagggagagagagagagggagagagagagagagagagaagagatgacGGCTTCTCTTTTCTCCATCCACAGACTTCACCAAGTGTCTCGGCGCTCAGGAGCGTTATGGTGTAAGCGTCCGGGACTCGCAGTTGACAGCGGTCGGCTCTGACAAACTCGCTTGTGCTAAGAAGttGCAGTTGGAAATGCTGAAGCCGGGGGATCAGAGCGGTTCTGCTTTCCTTAAAGTGGATCCGACTTACCTTCAGCACTGGCAGCAGCTTTTCCCGCAGAGTCAGCTGAAGAACTGCGCAATTCCGCAAATCCCGGCGCCCGATCGAGCGCCTGTAGCAGCGGAGAGCCTGCGCCAGAGAAGCGGGTTAATCTCCTCCACCAGCGCCTCGGCCGCTTTAACGCCGTCCTCGAGCTCGTCTTGCGCTCCTGCCGTGTCCGCGCTCGCGGGCTTAACGCAGCTCTCCGCGCCGCAGCTCGCGCTGTTCGGACACTCTCTCTGTACAGAGGTCGCAGCGGCGGAAAACAGCGGCGCGTCTCAGCCCAAGGAACTTTGCCTGCAGTCCAACTTTAACGACAAAGCGTCCCGGTTGAAGCTGACCTCAGAGGAACTGGACTACTATCTATACGGACAGCAGAGGATGGAGATTATCCCACTGAACAATCACACCAGTGATCTCAATAACCGCTGTGACATGTGTGCAGATAACCGGAACGGCGAGTGCCCCATGCACGGGCCCCTGCACTCGCTGCGGCGCCTGGTAGGGACAAGCAGTGCAGCCACTGCTGCGCCCCCTCCAGAGGTTCCCGAGTGGCTGCGTGACCTGCCCCGCGAAGTCTGCCTCTGCACCAGCACAGTGCCAGGCCTGGGCTATGGTATCTGTGCTTCCCAGCGCATACCACAGGGCACTTGGATTGGACCTTTTCAGGGTATTCCTCTGCTGCTGGATAAGGTGCAGTCAGGAGCGGTGCGCAACACAAGACACTTATGGGAGATCTATGACCAGGAGGGCACGTTACAGCACTTTATTGATGGCAATGATCCAAGCAAGTCAAGCTGGATGAGGTACATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTGGTTCAGTACAGATCATGTATTTTCTACCGGGCTTGTATGGATATTCCACGAGGAACAGAGCTTCTGGTCTGGTACAATGACAGTTACACCTCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAGGATGAAAACTTGAATGTGCCATCTACTGTAATCGAGGCCATGTCCCGACAAGAAAGCCTGCAGCCTTTCAGCAAAACATCCAAATCCTCTACAACTGTCATGCTGCAGCGCTCCATGGTTTTCCCTCACTCACCCTGCTCACGGAGCTTCTCTCTGCTGGACAAGGTGGGCAACATGGAGTCTGGCTTTAGCCAGCTGAACACCAAGAACCAGCGGGTTCTAGCCAGTCCCACATCCACCAGCCAGCTTAACAGTGAGTTCAGCGACTGGCACCTCTGGAAGTGTGGCCAGTGCTTCAAGACCTTCACACAACGCATTCTTCTGCAaatgcatgtgtgcacacaGAATCCAGACAGACCATATCAGTGTGGACACTGTTCACAGTCCTTTGCCCAGCCCTCAGAGCTGCGCAACCACGTGGTAACACATTCCAGTGACCGGCCCTTCAAGTGTGGCTATTGCGGCCGTGCTTTCGCCGGAGCCACGACGCTCAACAACCACATCCGCACCCACACCGGGGAGAAGCCATTCAAGTAAGTAACAGTGTGAGCGGTGCGAGAGGAGCTTCACGCAGGCCACACAGCTTAGCAGACACCAGCGGATGCCCAACGAGTGCAAACCCATCAGCGAGAGCAGCGAATCAATTGAGG
>XM_026947639.2
CCGCCACAGCAGAAGGAgggcagagagagggagagagagagagggagagagagagagagagagaagagatgacGGCTTCTCTTTTCTCCATCCACAGACTTCACCAAGTGTCTCGGCGCTCAGGAGCGTTATGGTGTAAGCGTCCGGGACTCGCAGTTGACAGCGGTCGGCTCTGACAAACTCGCTTGTGCTAAGAAGttGCAGTTGGAAATGCTGAAGCCGGGGGATCAGAGCGGTTCTGCTTTCCTTAAAGTGGATCCGACTTACCTTCAGCACTGGCAGCAGCTTTTCCCGCAGAGTCAGCTGAAGAACTGCGCAATTCCGCAAATCCCGGCGCCCGATCGAGCGCCTGTAGCAGCGGAGAGCCTGCGCCAGAGAAGCGGGTTAATCTCCTCCACCAGCGCCTCGGCCGCTTTAACGCCGTCCTCGAGCTCGTCTTGCGCTCCTGCCGTGTCCGCGCTCGCGGGCTTAACGCAGCTCTCCGCGCCGCAGCTCGCGCTGTTCGGACACTCTCTCTGTACAGAGGTCGCAGCGGCGGAAAACAGCGGCGCGTCTCAGCCCAAGGAACTTTGCCTGCAGTCCAACTTTAACGACAAAGCGTCCCGGTTGAAGCTGACCTCAGAGGAACTGGACTACTATCTATACGGACAGCAGAGGATGGAGATTATCCCACTGAACAATCACACCAGTGATCTCAATAACCGCTGTGACATGTGTGCAGATAACCGGAACGGCGAGTGCCCCATGCACGGGCCCCTGCACTCGCTGCGGCGCCTGGTAGGGACAAGCAGTGCAGCCACTGCTGCGCCCCCTCCAGAGGTTCCCGAGTGGCTGCGTGACCTGCCCCGCGAAGTCTGCCTCTGCACCAGCACAGTGCCAGGCCTGGGCTATGGTATCTGTGCTTCCCAGCGCATACCACAGGGCACTTGGATTGGACCTTTTCAGGGTATTCCTCTGCTGCTGGATAAGGTGCAGTCAGGAGCGGTGCGCAACACAAGACACTTATGGGAGATCTATGACCAGGAGGGCACGTTACAGCACTTTATTGATGGCAATGATCCAAGCAAGTCAAGCTGGATGAGGTACATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTGGTTCAGTACAGATCATGTATTTTCTACCGGGCTTGTATGGATATTCCACGAGGAACAGAGCTTCTGGTCTGGTACAATGACAGTTACACCTCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAGGATGAAAACTTGAATGTGCCATCTACTGTAATCGAGGCCATGTCCCGACAAGAAAGCCTGCAGCCTTTCAGCAAAACATCCAAATCCTCTACAACTGTCATGCTGCAGCGCTCCATGGTTTTCCCTCACTCACCCTGCTCACGGAGCTTCTCTCTGCTGGACAAGGTGGGCAACATGGAGTCTGGCTTTAGCCAGCTGAACACCAAGAACCAGCGGGTTCTAGCCAGTCCCACATCCACCAGCCAGCTTAACAGTGAGTTCAGCGACTGGCACCTCTGGAAGTGTGGCCAGTGCTTCAAGACCTTCACACAACGCATTCTTCTGCAaatgcatgtgtgcacacaGAATCCAGACAGACCATATCAGTGTGGACACTGTTCACAGTCCTTTGCCCAGCCCTCAGAGCTGCGCAACCACGTGGTAACACATTCCAGTGACCGGCCCTTCAAGTGTGGCTATTGCGGCCGTGCTTTCGCCGGAGCCACGACGCTCAACAACCACATCCGCACCCACACCGGGGAGAAGCCATTCAAGTAAGTAACAAGCCAGAGGAGCTAGGCCTACAGGATGCAATCAGGAGCTGTTGTCTCAGAAGCTGGGACAAGGAATGTGTACAAGCTGAAG
>XM_034306361.1
TCCGCCACAGCAGAAGGAgggcagagagagggagagagagagagggagagagagagagagagagaagagatgacGGCTTCTCTTTTCTCCATCCACAGACTTCACCAAGTGTCTCGGCGCTCAGGAGCGTTATGGTGTAAGCGTCCGGGACTCGCAGTTGACAGCGGTCGGCTCTGACAAACTCGCTTGTGCTAAGAAGttGCAGTTGGAAATGCTGAAGCCGGGGGATCAGAGCGGTTCTGCTTTCCTTAAAGTGGATCCGACTTACCTTCAGCACTGGCAGCAGCTTTTCCCGCAGAGTCAGCTGAAGAACTGCGCAATTCCGCAAATCCCGGCGCCCGATCGAGCGCCTGTAGCAGCGGAGAGCCTGCGCCAGAGAAGCGGGTTAATCTCCTCCACCAGCGCCTCGGCCGCTTTAACGCCGTCCTCGAGCTCGTCTTGCGCTCCTGCCGTGTCCGCGCTCGCGGGCTTAACGCAGCTCTCCGCGCCGCAGCTCGCGCTGTTCGGACACTCTCTCTGTACAGAGGTCGCAGCGGCGGAAAACAGCGGCGCGTCTCAGCCCAAGGAACTTTGCCTGCAGTCCAACTTTAACGACAAAGCGTCCCGGTTGAAGCTGACCTCAGAGGAACTGGACTACTATCTATACGGACAGCAGAGGATGGAGATTATCCCACTGAACAATCACACCAGTGATCTCAATAACCGCTGTGACATGTGTGCAGATAACCGGAACGGCGAGTGCCCCATGCACGGGCCCCTGCACTCGCTGCGGCGCCTGGTAGGGACAAGCAGTGCAGCCACTGCTGCGCCCCCTCCAGAGGTTCCCGAGTGGCTGCGTGACCTGCCCCGCGAAGTCTGCCTCTGCACCAGCACAGTGCCAGGCCTGGGCTATGGTATCTGTGCTTCCCAGCGCATACCACAGGGCACTTGGATTGGACCTTTTCAGGGTATTCCTCTGCTGCTGGATAAGGTGCAGTCAGGAGCGGTGCGCAACACAAGACACTTATGGGAGATCTATGACCAGGAGGGCACGTTACAGCACTTTATTGATGGCAATGATCCAAGCAAGTCAAGCTGGATGAGGTACATCCGCTGTGCCAGACACTGTGGGGAACAGAACATGACAGTGGTTCAGTACAGATCATGTATTTTCTACCGGGCTTGTATGGATATTCCACGAGGAACAGAGCTTCTGGTCTGGTACAATGACAGTTACACCTCCTTCTTTGGCATCCCCCTGCAGTGCATCGCACAGGATGAAAACTTGAATGTGCCATCTACTGTAATCGAGGCCATGTCCCGACAAGAAAGCCTGCAGCCTTTCAGCAAAACATCCAAATCCTCTACAACTGTCATGCTGCAGCGCTCCATGGTTTTCCCTCACTCACCCTGCTCACGGAGCTTCTCTCTGCTGGACAAGGTGGGCAACATGGAGTCTGGCTTTAGCCAGCTGAACACCAAGAACCAGCGGGTTCTAGCCAGTCCCACATCCACCAGCCAGCTTAACAGTGAGTTCAGCGACTGGCACCTCTGGAAGTGTGGCCAGTGCTTCAAGACCTTCACACAACGCATTCTTCTGCAaatgcatgtgtgcacacaGAATCCAGACAGACCATATCAGTGTGGACACTGTTCACAGTCCTTTGCCCAGCCCTCAGAGCTGCGCAACCACGTGGTAACACATTCCAGTGACCGGCCCTTCAAGTGTGGCTATTGCGGCCGTGCTTTCGCCGGAGCCACGACGCTCAACAACCACATCCGCACCCACACCGGGGAGAAGCCATTCAAAGCCAGAGGAGCTAGGCCTACAGGATGCAATCAGGAGCTGTTGTCTCAGAAGCTGGGACAAGGAATGTGTACAAGCTGAAGACCTGAGATCAAAGCTCAGCACTATGGCTTTCTAAGAGGTATGAAACCGGTCACTGTGTCAG

Function

symbol description
prdm6 Human ortholog(s) of this gene implicated in patent ductus arteriosus. Orthologous to human PRDM6 (PR/SET domain 6).

NR:

description
PREDICTED: putative histone-lysine N-methyltransferase PRDM6 isoform X1

GO: NA

KEGG:

id description
K20795 PRDM6; [histone H4]-lysine20 N-methyltransferase PRDM6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947487.2 True 2987 mRNA 0.48 8 15246946 15272805
XM_026947559.2 False 1904 mRNA 0.56 8 15246939 15271705
XM_026947639.2 False 1878 mRNA 0.56 8 15246939 15276878
XM_034306361.1 False 1931 mRNA 0.56 8 15246938 15276940

Neighbor

gene id symbol gene type direction distance location
snx2 snx2 coding upstream 37856 15195053 ~ 15209082 (+)
sncaip sncaip coding upstream 72216 15165645 ~ 15174722 (+)
LOC113532232 lox coding upstream 83578 15156839 ~ 15163360 (+)
prr16 prr16 coding upstream 99516 15135686 ~ 15147422 (+)
dmxl1 dmxl1,LOC107571775 coding upstream 134120 15077670 ~ 15112818 (+)
LOC117595717 nudt12 coding downstream 74286 15351226 ~ 15357477 (+)
LOC113531612 nudt12 coding downstream 80976 15357916 ~ 15364024 (+)
lrrc2 lrrc2 coding downstream 121332 15398272 ~ 15402724 (+)
spinb LOC108265781 coding downstream 141524 15418464 ~ 15439687 (+)
csgalnact1b LOC108265223 coding downstream 165560 15442500 ~ 15452743 (+)
G133220 NA non-coding upstream 37092 15209515 ~ 15209846 (+)
G132968 trim36 non-coding upstream 422575 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 502792 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 505976 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 763202 14474642 ~ 14483736 (+)
G133260 NA non-coding downstream 22244 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 66814 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 77521 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 124506 15401446 ~ 15401762 (+)
G133342 NA non-coding downstream 148249 15425189 ~ 15426372 (+)
commd10 commd10 other upstream 264054 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 267034 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 923488 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1224251 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1298130 13890404 ~ 13948808 (+)
srp19 srp19 other downstream 102002 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 725121 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1125808 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1303317 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1439193 16716133 ~ 16737984 (+)

Expression


Co-expression Network