LOC113532232 (lox)


Basic Information

Item Value
gene id LOC113532232
gene name lox
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15156839 ~ 15163360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306381.1
GCGCATGACCAGTGCCACTAGTGTGCTTTGAAACCAGTCCAGAAAGTCCACAAAAATCCAGCCCTCCCTGCAAAACTTAGCCCACACAGGTTCTCATAACCAAAGGTAGACCTTCTGAGACTCTCTCTGAGATGTAAGGCTTTAAATCATTCCAATGCGCCGCATTTGGGATTTGCGCGCGCTTTCCTTTACCCGGGCAGGGACAATTTCGTGAAGATCCATCGAGCAAATAAAATATGAGGAACACAGTTTTTAGAGTTTTGGTGCTTTTTTCCTTTGGCTTAAGAAGCTGCGTTTTGCAGGCTGTTGACGGTGAGCTGCGCTCTGGGTCCAGAGAAGCAGCACGCGGGCATCCGGCAGGTGTCTCGCGCCTGGCGATACGATGGAGCGGTAACGGGCGCGTGTATAACCTACTGAGCCACGGCTCTGAATATCTACCGGCGCGCCGACGAGGCAACGTGGCTGCGATCAGACCTGCGCTGGTGATCCGAGAATCAAACGAGACCGTGCCGAGTCGCCCGAGCGCGCACACCAAACCCGACTCCCGAGCGCACACAGAAAGCACGCACTCCGACAGTGGAGACGTGATGATGGCAGATCATCCATACGACCCTTACAAGTCCCTCCGCAACGACCTCTACAACCCCTACTACAACTATTACGACTCTTACTACCAGCCGCGCTACAGGAGCAGAGTTAGACCTGGCTATGGCACAAGGTTTTTCCAGCATGGGCTTCCAGATCTGATTCCAGACGCGTATTATGTGCAAACTTCCACTTATATACAAAGAGTGCCAATGTACAACCTTAGATGTGCAGCTGAGGAACACTGCTTGACAAGCTCAGCTGCGCATGCGCGGGACTACGACACACGTGTCCTGCTCAGGTTTCCCCAGCGTGTGAAGAACCAGGGTACTGCTGACTTTCTCCCCAGCAGACCACGATACGCCTGGGAATGGCACAGCTGCCACCAACACTATCACAGCATGGATGAGTTCTGCCATTATGATCTCCTGGATGCTTCCACCCAGAACAAAGTAGCTGAAGGCCACAAAGCCAGTTTCTGTCTGGAAGATACCTCCTGTGACCCTGGCTACCATAGGCGCTATGCctgcacatcacacactcagGGTCTGAGCCCAGGATGTTATGACACCTACAATGCAGACATTGACTGCCAGTGGATTGACATTACTGATGTCAAACCTGGAAAGTACATTCTTAAGATATCTGTGAATCCAAGCTACCAGGTTCCAGAGTCAGACTTTAGCAATAACATAATGCGCTGTGACATTCAGTATACGGGCAATTATGTTCATACATCCGGGTGCAGTATATCTCAgtaCTGATTGCAGAGTGTTGTCATCAAACTCAAAATATcagtcattaaaaaacaaaaactcctCACCCACCGCAAGCACAAGCACAGATGCCTGATGGGGAAGTCAAGGGGTACAACGTACAATcctgttattattaatacatcAAAATGTATGTAAAGGCAATTACAAAAAGTTAAATCAcaggtacagtacagtacattgGTAGAAAGGTTCTAAGTAAAACCATACAACATTGTGTTTCATTTAGCagatgtataatataatataaataaaattacataaaagtGAATCAGAAATCAGttaagaatagaaaataatattcTGGCCGGAGGTTATATAATATTATCTCATTGTTGTAGTTAAAATGGAAAGATGGGGaaacattttattcttattagtGATAATGTGCTATGTATTACACCAAATCTATTCTCTGTCAAATgtcaaatataaattttcccCTTTTTGTAAtatagtatttttataacacAACTCATTTTTGGTTATTTATCCATTAGTATTATAATCAAATAGTAAATGTTCTATATGAATACTTAAATTGTAAATCATATCTTTTCTGATTTTCTCTGTATGAATTCTTCACTACTGcattatttaatcaaatataTCACTAATATTATCTTTGCAGTGGTTAGGGCTAGTTCACCAGTTGTTTATATTCTGAGtaactatttatttacatgtattttgcAGAGAAATGGGTTACAACTTTTGGGTTATGGgttataacttttaaaaatttgaatgaactgaattaaaatctAATATTAAATCTGAA

Function

symbol description
lox Enables collagen binding activity and protein-lysine 6-oxidase activity. Involved in peptidyl-lysine oxidation. Located in extracellular space. Implicated in Ehlers-Danlos syndrome; Menkes disease; hypertension; and thoracic aortic aneurysm.

NR:

description
PREDICTED: protein-lysine 6-oxidase

GO:

id name namespace
GO:0048731 system development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306381.1 True 2142 mRNA 0.43 7 15156839 15163360

Neighbor

gene id symbol gene type direction distance location
prr16 prr16 coding upstream 9417 15135686 ~ 15147422 (+)
dmxl1 dmxl1,LOC107571775 coding upstream 44021 15077670 ~ 15112818 (+)
ap3s1 ap3s1 coding upstream 219395 14921143 ~ 14937444 (+)
prf1.5 LOC108265013 coding upstream 877558 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 887410 14266625 ~ 14269429 (+)
sncaip sncaip coding downstream 2285 15165645 ~ 15174722 (+)
snx2 snx2 coding downstream 31693 15195053 ~ 15209082 (+)
prdm6 prdm6 coding downstream 83578 15246938 ~ 15276940 (+)
LOC117595717 nudt12 coding downstream 187866 15351226 ~ 15357477 (+)
LOC113531612 nudt12 coding downstream 194556 15357916 ~ 15364024 (+)
G132968 trim36 non-coding upstream 332476 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 412693 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 415877 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 673103 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 828970 14327652 ~ 14327869 (+)
G133220 NA non-coding downstream 46155 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 135824 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 180394 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 191101 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 238086 15401446 ~ 15401762 (+)
commd10 commd10 other upstream 173955 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 176935 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 833389 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1134152 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1208031 13890404 ~ 13948808 (+)
srp19 srp19 other downstream 215582 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 838701 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1239388 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1416897 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1552773 16716133 ~ 16737984 (+)

Expression


Co-expression Network