LOC117595717 (nudt12)


Basic Information

Item Value
gene id LOC117595717
gene name nudt12
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15351226 ~ 15357477 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306509.1
CCCTGTTGTACATATGTCTGAAATCACACCATATTCACTACATAGTCCACTATTTGGGGAGTTTTGCCAAATTGGATTCAAGTCTAAAAACACTGTGGGGAATAGCTGGTGAATTCATGAAATTCTGCAATGCAATACAAGAGGTTGTAGTCCAAACGATAAACATTAGAGGGTAAACAACACATGTAATGCACtttagggaatagggagtagggcacCACATCGGATGAAGACTGTTAATTATTTACTCCTACCGTACTTCTGCAAGCTTATATTATATAGCGTCGTGATTTCTCTGCACCTTTGGTGTCAGATTTGAAAGCTTAAgttagttttattcattttaaacgTATTATATTACACCTAAAGATCCACTTAGTGAAAAGCTCACTTAGTGTGAAAGCTCTCACATCGTATACTACCACCTGGTACTCAAAATACTTAAGACATGACAAGTGTTCAGATGAGTGCTAAGGATGAGATGGTTGAGCAGTTCCTGGATTATGCTTCCAGGGGCGACTTGGCCAAAGTTTCCACTATGATCTCTCACTACAGTCAACTGCTCAATGAAAGTGGGAGACAAGGATGGACAGCCTTAATGCTGGGCGAGAACGGACACTTTGATGTGGTAAAAGCATTACTTTTAAATGGGTGTAATAAAGATTTGGTGAATAAGTCAGGCCAAACTGCTCATGACATAGCAAAATTCTGGGGCCACAGACACATTGCCCGTTTTTTATCCAGCAGTGGGGATGTCACACTTCAAGGGGTTCTACCCAGCAATAAATCTACAGAGAATGAAACATACTTCAGTAGAGAATATCTCAACAGAATGAGTGATAAAAGGACTGATTCGGAATGGCTTTCAGCTAAACAGTCTTCTCCTGAAACAGtgttcattgtgttttataaCTTGGACCCTTTTGTTACAACAGAGCCGGAGGAAATGAATGATATTCAACCTAAGTTAAAACTATACAGGTTTGGAAAGGACTCTGTGAAAGAAGTAATCGAAAAGAGTGACACAGTGGTTATTTTTCTGGGAGTAGAAAAGCAGGAATGTTCACCTTCTTCTGCGGTGTCAAAGGAGGATGGACTCATTGCATGGTTCGCTCTAAATACCAACAACAATCCCACAGAAAGTCTTAAGGTCACAGCTTCAAACAGCTTCTTCCTTACAAGGCCAATGCCAAGGCTCCTAATGCTAAATGAAGATGAAGCAGGTATTGTTGCACAAGCAAGGTCTGTCCTTGCATGGCACAGCCGGTACAGTTTCTGCCCAACGTGTGGTGGTGAGACTAAAGTGGATGAAGGAGGTTACAAACGAACCTGCTTGACAGAGGGCTGCAGGAGTCTCCAGGGAATCCACAATACCTGCTACCCTAGAGTTGATCCTGTGGTGATCATGCTGGTCCTTCACCCAGATGGGAATCAGTGCCTACTAGGAAGAAAGAAGACATTTCCTCCAGGAATGTTTTCATGTCTTGCTGGGTTCATTGAACCAGGTGAGACCATTGAAAATGCAGTAAGGAGAGAGGTTTTAGAAGAGAGTGGAGTTGCTGTTGGCCCTGTCCAATATGTCTCCTGCCAGCCATGGCCAATGCCTTCATCACTCATGATTGGTTGCTTTGCAGTAGCAGTGTCTACAgacataaaggttgatgaaaatgaaattgaagATGCTCGCTGGTTCACGAGGCAAGAGGTAATAGATGCTCTTGTGAAGGATAACCAAGCAGTTTTTTTCATGCCTCCAAGACAAGCTATTGCCCATTATCTTGTGAAACACTGGATTGGAATAAACTCAAACCTTTAAACTGAATGTTACCAGCATTATTGGGGTGTTTTCCTAATTTGTCATGAGATGTGGTTGGGAGGTATGAGAGTTTGAGATGGACTCAAAAGTGCATCTTACATCATAAAActcttttaaattaatataattattatgaattaattGTAGTATTACTATATGAAATAGATGTAAGTGACCAGATTGTCATTCTAACAATCTTACAAATGATTACACTTGTAAGTTGTACTACCTTTCATTCCAGACTGCGAGGGTGGATTATTTCAGAGCCGGTGGTGTAttgccattttctcattttcttgcaAAGTTCCAACAGTAAATTTGTCACCTTGTGCCCAAGACTGGGTAGCCTGTAAAAGGTCCCACTTCGTCCTGCTAGTCCTCATTTCCAGGCTTATCTTGTCAAGAAGTTAAGGTAGCCTCTTGTCTGGCCAGCTTCATCAGGTTCTGTAGCGATATCAGAAGAtgtgtttactgcagtttcTGTAACAAGGCAGTTTTCACAGGGTGGAGTTGTTGGCCTCATGCCCAACCCCCAACCTGGAGGTCCAGGGGCTGAATCTAGTCTGGCCCCTGACCCAAGGCCTGTCTGGCACGGTTAGACCTGCCAGGGATATTTGTCCCTGCCATTGTAGCTCTCAAGTTCTCTGGGATGTGCAAATGGGTCCACCAATGACAAGGTAGCAGCCCAGGACCAGATAATTTACCAggataattgaaaaaaaaaattgagtatCAGGCTCTATTCGCTTGATTCTTGCTAATAAGTCCAATGTTCTAAAATGAGAAAGATAAGCTCCTTGGCCAAGTTTCCCCAGTAGGAACATAAAAAGGTCagccagacagcatggccagttttgctgtcTTGGACTCCTGATCTCTGGACACTGGGCAAACGCTTTTCTATTAGGCCACTTTGGAGCCCAACAGAGCTTTTTAAAACAGTCACATTCCACCTATCTTGTGGTGACTTACAGTGAAATTTAATCAATGCCTTCTCACAAATTAGctttgagcattcaacagtgctgtggcatAAATACGGTTATCAAAAGCCAATCAATGacaatttacaatatatttttgtgaatccatttatttctgtaaagctgctttgtgacaatgtccattgttaaaagcgctatacaaataaaattgaattcaattgAATCAATGGATGAAGTTCAAAGCGTATGGGAACAGAGCTTCAGGATTTCTCTGTAGTATGTATAGTAGAGCCAGTGTGCATATTGTGGAGAGCACATACAATTCAGTGATTCTCAATAGGGTTCTGGGTTACTAATAAGacggtcaggggttcaagcaccaccaagctaccacaactgggcccttgagcaaggcccttaggACAGGTAAAGGAAACAATTTCTGTGTATTGCATGTGTGTCATGTGTATGCTGTACACTAATTATGAATTCAGATGTGATTTGTGGCTTGTGTCTTTGGTTCTACAGTCTTGTTTATTCTTCCACAAGCTGTTCATCCATATTATCTCCAAtcactacactttttttttttttttccccagtatttTCTGTAAACCCTGGAAATGGCTGTGTGAAAACATTCTGAACAATGTGCCAATCATTGTTATACATACGTCAATAAGGACATTTGTTGGCATCATTATATGTAAGCCAATAAGGACCTCTGATGCTAGAAATTCTGGTCTGCCTGATCTGTACCACACATTGTAATCATGCATGACTTGTTTgtgtgaaggtgaaggtgagtGTTTTAGATAATACACTGGCAATTCAGTGGAAGTTTctcaaaataaaggaaaatgcaTTGATAAAGCAAGAATATTTCAAACACTGAGATTGAAAAAAGATTGAATCAAATACATGTTTGCATTAGGTTTTATGGAAGCAAAACTTAGACTGTGTAAATTAGGGCTTCCTAAATCAAATACACAACTATCCCCAGCTATATACGAGCAGGTATAATGTGCGTTTGAGACAAAGAAATGACTTGGTTCCTTATGTCTCATGTGAGTATGACATctgaatttttcctttttcatatgATCAAACCAGATTTTAGAGATTTCAGAAACCCCTAATTCTCAAGGAtgacaatttgtttgcatttattttaaatatacctCAGGGGGGTCTGTAATGTTTTCCCAGAACAAATGGTTATCCAACTGAGTGGAAAACATGGTCCATTTTGTGTAATGCttgttttattcaattattGTTGTCACATGTTGTAGACACATATATGATGTGTTCCCATCATTTCTACTTACTGATATAGATATCTTTTATTTCACGTTGTATGATTTTCTGACtgttataactgtgtgtgtgcttggaaATATGTGCTGTACAATTAAAGAACTTCTAAATGTGTTGTATTAA

Function

symbol description
nudt12 Predicted to enable NADH pyrophosphatase activity. Predicted to be involved in NAD catabolic process; NADH metabolic process; and NADP catabolic process. Predicted to be active in cytosol and peroxisome. Orthologous to human NUDT12 (nudix hydrolase 12).

NR:

description
PREDICTED: peroxisomal NADH pyrophosphatase NUDT12 isoform X1

GO: NA

KEGG:

id description
K03426 E3.6.1.22, NUDT12, nudC; NAD+ diphosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306509.1 True 4203 mRNA 0.40 9 15351226 15357477

Neighbor

gene id symbol gene type direction distance location
prdm6 prdm6 coding upstream 74286 15246938 ~ 15276940 (+)
snx2 snx2 coding upstream 142144 15195053 ~ 15209082 (+)
sncaip sncaip coding upstream 176504 15165645 ~ 15174722 (+)
LOC113532232 lox coding upstream 187866 15156839 ~ 15163360 (+)
prr16 prr16 coding upstream 203804 15135686 ~ 15147422 (+)
LOC113531612 nudt12 coding downstream 439 15357916 ~ 15364024 (+)
lrrc2 lrrc2 coding downstream 40795 15398272 ~ 15402724 (+)
spinb LOC108265781 coding downstream 60987 15418464 ~ 15439687 (+)
csgalnact1b LOC108265223 coding downstream 85023 15442500 ~ 15452743 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding downstream 96571 15454048 ~ 15463883 (+)
G133306 NA non-coding upstream 7195 15343754 ~ 15344031 (+)
G133260 NA non-coding upstream 51839 15299184 ~ 15299387 (+)
G133220 NA non-coding upstream 141380 15209515 ~ 15209846 (+)
G132968 trim36 non-coding upstream 526863 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 607080 14742482 ~ 14744146 (+)
G133330 NA non-coding downstream 43969 15401446 ~ 15401762 (+)
G133342 NA non-coding downstream 67712 15425189 ~ 15426372 (+)
G133386 NA non-coding downstream 239931 15597408 ~ 15606339 (+)
LOC117597798 NA non-coding downstream 272976 15630453 ~ 15640958 (+)
G133617 NA non-coding downstream 614383 15971860 ~ 15972109 (+)
commd10 commd10 other upstream 368342 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 371322 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1027776 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1328539 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1402418 13890404 ~ 13948808 (+)
srp19 srp19 other downstream 21465 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 644584 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1045271 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1222780 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1358656 16716133 ~ 16737984 (+)

Expression


Co-expression Network