LOC117597835


Basic Information

Item Value
gene id LOC117597835
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 17061058 ~ 17081950 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_034306703.1
GTCAGAGAGAAAACGGCTGCTGTGTTGCTGGTGAAGTCTCAGGATTTTACAAGACTATACAAGAACAATGAGTGCAGAGGAGTGCTTCAGACTCAAGGAAAGtcgctGCAACAGTGAGGTGAGAATCGAACACTCTCTGAATAAGAATGAGGAGAAGTTTGCAATCAGAAGGATAAAGACTGTTCAACAAGCGCTGCAGAAACTTGGGATACACTGCAGTCTGGATGAAGTGCCAAACATTGCATTACTGGGTtctggaggaggagaaagagccATGGTGGGTTTGCTGGGATCCCTGGTTCAACTCGAAAAAGCAGGTTTTCTGGACCTTATCCTTTATCTGAGTGGAGTCTCTGGATCAAcctgGTGCATGGCCTCCTTATATCAGGAACCAGACTGGTCCACCAAACTGGAGGCTGTGAAAGACAAGATCATCAAGAGACTCAGCGGTCCTGCAGTCAGCTGGACAGATGCATTTGCCAAACTGAAGAAATATTACTATGAGAAAGACAACTTCAGCTTGACTGACTTCTGGGCAGCAATGGTCGTCACGACATATGTGAAAGAGATcgatgaacacacactcacagagcagTGGAGCCAGCAGAGTCAAGACCCGTTTCCCATCTACACAGTGATCGACAAGAAATGCAAACAGGAAAAGGAAGcagacCCCTGGTTAGAGTTCACTACACAAGAGGCAGGTTATTCCCTCATTGGAGCATTTTTGAGAGCCTCCAGCTTTGGCAGTCAGATTGAAAAAGGCTCTATGGTGAAGAAGCAGCCTGAAATTGACATACTGTTCCTGCAAGctctgtgtggcAGCGCTTTAGCTGATGGAGAGGAGCTTGTGAAATTCATCTGGCAAAAGATAAAAGatTTCTTTAAGCACATGTTTCCTCACATAAAAAACATACTTCAGGAAAAGGGGCAAGATCCAGACTCTCCACCTGCAGACACCTTCCAGGACGTTGTGGAAAAACTTGTGGACATGAATCTCTATGTTTTGGATGGCAAAGATCCTTCTGCTCTTGATAAATCCATCAGAACAATGCTGATCGGTCTCGCTGGAGGCAAAAGACAGCTGATTTTTCAAGTGGAAAAACTGAATCTGCATAATAAAGAAGCTGCAAAACTGTATATGAAGCGTTACACCATGGATGTATGCAACAATTTGAGTGTTTGGTTCAAACTCTGGCCATTCGATCTTTGCTGCAGCATTTTAAGATGCGCGACTCAGTGGATTTGGGGCAGGGAATATAACTTTCTCCACAACATGACAGCTAAAGCATTGCCTGACCCTCTTCTGAAAAGTGAGACGAGAGACTATATAGATGCTGGGCTGTTGCTCAACTCACCCTACTTCTCAgtgctgagaaaagagagaaacgtTGAACTCATCATTTCCCTGGATTTCAGTGATGGTGATCCTTTCATGACAGTGAAGAAAGCTGCTGAGATGTCCAAGGAACAAAACATCCCTTTCCCTGAAGTCATCATACCCCCTGAGGACCCACCGAAGGACTTCTATGTGTTCGAAGGCCAAAAAGTTCCAACTGTGATACACATCCCTCTCTTTAATGTGGTCAACTGTGGAGATAAAACTGAGGAGTGGAGGAAGAAATATCACACTCTTCAAGGTCCTTACAGTGCTGAGATGATCACTGATCTTATGGACGTAGCtggaaaaaacatcacaaacaacaaagaaaatttGAAGAAAGTGATTTGTGCGATcgttgagcaaaaaaaaatgggttaATACACAACAAATGACAGTAATGTATCTAAATACAGACTAAACTGATCTGCATATAGTTGATTGAACAATAAATGGTGTTTCgtttctttttctatcttttaTAATCACTTAACATTGATCAGCATTATTACCTTTTCTgcaaaatgtgatttttgtgcCATAATAAGAGCATCAGAGATTGATAAAGTTTGcgcttcatttctttttaatgttgaaaatgtttctGCATGTTTCAATCTGTTTCTTCATGACTGACCTTCATTAAGCAATAAATATCTGATTATTAATTATCAAATCAGCAATAACAGACTGGATTGCATATATAACAACAGTAATTGcagattaaaatatatata
>XM_034306704.1
AGAGAGAAAACGGCTGCTGTGTTGCTGGTGAAGTCTCAGGATTTTACAAGACTATACAAGAACAATGAGTGCAGAGGAGTGCTTCAGACTCAAGGAAAGTGAGGTGAGAATCGAACACTCTCTGAATAAGAATGAGGAGAAGTTTGCAATCAGAAGGATAAAGACTGTTCAACAAGCGCTGCAGAAACTTGGGATACACTGCAGTCTGGATGAAGTGCCAAACATTGCATTACTGGGTtctggaggaggagaaagagccATGGTGGGTTTGCTGGGATCCCTGGTTCAACTCGAAAAAGCAGGTTTTCTGGACCTTATCCTTTATCTGAGTGGAGTCTCTGGATCAAcctgGTGCATGGCCTCCTTATATCAGGAACCAGACTGGTCCACCAAACTGGAGGCTGTGAAAGACAAGATCATCAAGAGACTCAGCGGTCCTGCAGTCAGCTGGACAGATGCATTTGCCAAACTGAAGAAATATTACTATGAGAAAGACAACTTCAGCTTGACTGACTTCTGGGCAGCAATGGTCGTCACGACATATGTGAAAGAGATcgatgaacacacactcacagagcagTGGAGCCAGCAGAGTCAAGACCCGTTTCCCATCTACACAGTGATCGACAAGAAATGCAAACAGGAAAAGGAAGcagacCCCTGGTTAGAGTTCACTACACAAGAGGCAGGTTATTCCCTCATTGGAGCATTTTTGAGAGCCTCCAGCTTTGGCAGTCAGATTGAAAAAGGCTCTATGGTGAAGAAGCAGCCTGAAATTGACATACTGTTCCTGCAAGctctgtgtggcAGCGCTTTAGCTGATGGAGAGGAGCTTGTGAAATTCATCTGGCAAAAGATAAAAGatTTCTTTAAGCACATGTTTCCTCACATAAAAAACATACTTCAGGAAAAGGGGCAAGATCCAGACTCTCCACCTGCAGACACCTTCCAGGACGTTGTGGAAAAACTTGTGGACATGAATCTCTATGTTTTGGATGGCAAAGATCCTTCTGCTCTTGATAAATCCATCAGAACAATGCTGATCGGTCTCGCTGGAGGCAAAAGACAGCTGATTTTTCAAGTGGAAAAACTGAATCTGCATAATAAAGAAGCTGCAAAACTGTATATGAAGCGTTACACCATGGATGTATGCAACAATTTGAGTGTTTGGTTCAAACTCTGGCCATTCGATCTTTGCTGCAGCATTTTAAGATGCGCGACTCAGTGGATTTGGGGCAGGGAATATAACTTTCTCCACAACATGACAGCTAAAGCATTGCCTGACCCTCTTCTGAAAAGTGAGACGAGAGACTATATAGATGCTGGGCTGTTGCTCAACTCACCCTACTTCTCAgtgctgagaaaagagagaaacgtTGAACTCATCATTTCCCTGGATTTCAGTGATGGTGATCCTTTCATGACAGTGAAGAAAGCTGCTGAGATGTCCAAGGAACAAAACATCCCTTTCCCTGAAGTCATCATACCCCCTGAGGACCCACCGAAGGACTTCTATGTGTTCGAAGGCCAAAAAGTTCCAACTGTGATACACATCCCTCTCTTTAATGTGGTCAACTGTGGAGATAAAACTGAGGAGTGGAGGAAGAAATATCACACTCTTCAAGGTCCTTACAGTGCTGAGATGATCACTGATCTTATGGACGTAGCtggaaaaaacatcacaaacaacaaagaaaatttGAAGAAAGTGATTTGTGCGATcgttgagcaaaaaaaaatgggttaATACACAACAAATGACAGTAATGTATCTAAATACAGACTAAACTGATCTGCATATAGTTGATTGAACAATAAATGGTGTTTCgtttctttttctatcttttaTAATCACTTAACATTGATCAGCATTATTACCTTTTCTgcaaaatgtgatttttgtgcCATAATAAGAGCATCAGAGATTGATAAAGTTTGcgcttcatttctttttaatgttgaaaatgtttctGCATGTTTCAATCTGTTTCTTCATGACTGACCTTCATTAAGCAATAAATATCTGATTATTAATTATCAAATCAGCAATAACAGACTGGATTGCATATATAACAACAGTAATTGcagattaaaatatatata

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_034306703.1 True 2118 mRNA 0.42 15 17061058 17081950
XM_034306704.1 False 2103 mRNA 0.41 15 17061061 17081950

Neighbor

gene id symbol gene type direction distance location
LOC113524948 NA coding upstream 10778 17037821 ~ 17050280 (+)
cux2b cux2 coding upstream 482369 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 621974 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 663433 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 685930 16371957 ~ 16375128 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 267366 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 329158 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 529436 17611386 ~ 17621646 (+)
enkd1 NA coding downstream 823854 17905804 ~ 17916639 (+)
polb polb coding downstream 846474 17928424 ~ 17939695 (+)
G134245 NA non-coding upstream 41162 17019679 ~ 17019896 (+)
G134242 NA non-coding upstream 44524 17016254 ~ 17016534 (+)
G134241 NA non-coding upstream 45002 17015751 ~ 17016056 (+)
G134238 NA non-coding upstream 69091 16991767 ~ 16991967 (+)
G134230 NA non-coding upstream 96001 16964834 ~ 16965057 (+)
G134301 NA non-coding downstream 129002 17210952 ~ 17211186 (+)
G134303 NA non-coding downstream 151225 17233175 ~ 17233424 (+)
G134344 NA non-coding downstream 216218 17298168 ~ 17355660 (+)
LOC117597810 NA non-coding downstream 230949 17312899 ~ 17330663 (+)
LOC117597877 NA non-coding downstream 294353 17376303 ~ 17378236 (+)
gucd1 gucd1,LOC102792582 other upstream 192290 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 323074 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 439292 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 641549 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 1042240 16002061 ~ 16018818 (+)
G134341 NA other downstream 214161 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 949025 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1354235 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2405537 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2743848 19825798 ~ 19902367 (+)

Expression


Co-expression Network