LOC113533561


Basic Information

Item Value
gene id LOC113533561
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 16951548 ~ 16974937 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_003403421.2
TCTGTCAAGCACGCAAGTTACAAGgtatttgtatttgtacGGAAAGCAAACAGTGATTATTAGATTTTCCACAACATAGATTGGAGATGTCGGCAGGATTGGAAAGGAGTCAAGAGGGTTGAAAGACCACAGCTAGGCTGACTAGAGGCAGACTACACAAACAGGCCTGCCAATGAAGAGAACAACTGGGAGAAACAGAAAACCCCACTACCTATGTGCAAAGACAATTTAAAAAGGGGAAACAAGAGCTGGAACAAGATTCAGTGAATCCTGAAGCAGATCCTGTAATGGCAACATGGTTCAGAGATGCAAGAGTGGACGCTATGCCACCACCCATAAAGGCCAAACTGGAAGATGTGGGAGGTCTAAACTCTAAAATGCATAAGGAGTTTTGTGACCATGTGACTCATGCAGTTGAACACTAcagaaagaatgaacaaaagctCAAGAATCAAGAAAGAGAGCTGCAGAGAAAGCTGGCACAGCTACAGTTTGAAGAACTGACAACAAATTAAAAGGAATACCCAAGCTCCAGtaagagacaaagacaaagaggaGGTAGCACAATCAGCAGTAATGTCTCCTCTGAATGCACCTCCTTAACCTGCTGTTCAGCCAAATGCACCTCCTCCACCTGCTGTTCAGTCAAATGCATATGCCTACTGCACTTGTCATCAGTGTCTACCAGCAACCAAATAACATGAACTGGCAGAGAAGGCCACCCCAAAGAGGACAAAGAGGAAGAGGTAGATTCAATTCTGGTCCTCAAGGGGTATGCTGGGGGTGTTGCGGACAGACTGGACATAACAGACATGATTGCCCCATGGCAAAAGCAACCTGAAGGGGAAGGATGGGCCCAGCCCTATCAACAGCCTCCACAAGGCCCAGTGCACCCATGGGGTGGGCCAAATTGTACTAGAGATGCCCAGAGAATCCTACTGGTCAGCTTCCAATTTTAACAACTGATGCTGATCAAGAACCTATGCTGCAGGTTAAAATAGAGAGCAAAATTACACCCATGATGGTAGACACTGGAGCAACATGCACATGTGTAAGTCCTAATTATGCCTCTCACCTCCCCTTTTCTGGAAAATTTGCAAAGACAGTAGGATTTTCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_003403421.2 True 1120 lncRNA 0.45 4 16951548 16974937

Neighbor

gene id symbol gene type direction distance location
cux2b cux2 coding upstream 372859 16460558 ~ 16578689 (+)
rad9b rad9b coding upstream 512464 16423733 ~ 16439084 (+)
dhx37 dhx37 coding upstream 553923 16376145 ~ 16397625 (+)
gp1bb gp1bb coding upstream 576420 16371957 ~ 16375128 (+)
sept5a sept5,LOC102226618 coding upstream 579807 16355696 ~ 16371741 (+)
LOC113524948 NA coding downstream 62884 17037821 ~ 17050280 (+)
LOC117597835 NA coding downstream 86121 17061058 ~ 17081950 (+)
seta seta,LOC108265615,LOC103031932,LOC107752982,LOC107699670,LOC107754404,LOC107560061 coding downstream 374379 17349316 ~ 17352590 (+)
crb2b LOC108264959 coding downstream 436171 17411108 ~ 17449062 (+)
lhx2b lhx2,lhx2b coding downstream 636449 17611386 ~ 17621646 (+)
LOC117597830 NA non-coding upstream 288234 16643490 ~ 16663314 (+)
G133890 NA non-coding upstream 511025 16439266 ~ 16440523 (+)
G133842 NA non-coding upstream 589299 16330580 ~ 16362249 (+)
G133724 NA non-coding upstream 779015 16172290 ~ 16172533 (+)
G133722 NA non-coding upstream 780048 16171185 ~ 16171500 (+)
G134238 NA non-coding downstream 16830 16991767 ~ 16991967 (+)
G134241 NA non-coding downstream 40814 17015751 ~ 17016056 (+)
G134242 NA non-coding downstream 41317 17016254 ~ 17016534 (+)
G134245 NA non-coding downstream 44742 17019679 ~ 17019896 (+)
G134301 NA non-coding downstream 236015 17210952 ~ 17211186 (+)
gucd1 gucd1,LOC102792582 other upstream 82780 16859976 ~ 16868768 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other upstream 213564 16716133 ~ 16737984 (+)
mtmr3 mtmr3,LOC107699659 other upstream 329782 16580257 ~ 16621766 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other upstream 532039 16402748 ~ 16419509 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other upstream 932730 16002061 ~ 16018818 (+)
G134341 NA other downstream 321174 17296111 ~ 17296883 (+)
vdac3 vdac3,LOC107754399,LOC107560056 other downstream 1056038 18030975 ~ 18048889 (+)
pbx3b pbx3,pbx3b,LOC108434408,LOC107550583,LOC107669256,LOC107555108 other downstream 1461248 18436185 ~ 18681932 (+)
G135287 LOC108265174 other downstream 2512550 19487487 ~ 19502643 (+)
LOC113533656 gnas,LOC108261582,LOC108265241,LOC108434415,LOC104936173,LOC102796627 other downstream 2850861 19825798 ~ 19902367 (+)

Expression


Co-expression Network