LOC117597782


Basic Information

Item Value
gene id LOC117597782
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12809123 ~ 12809738 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578530.1
ACTGGAAGCAACCACTCCCAAAGGATAGACATGTTTCATCATAATATAAAGTTTCCAGATGGACAATTCATCCTGGCAGTACTTCTCTCTTGCATACCAGGCTAAAGCTTTATAAAATGGTTTATAAGAGTATATCAGCCACACTGTGAACAATAAAGAGTGATTTGAATGAGCTTCTCAGAACAGAACATCTGCAGAGAGACTCTGGACACCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578530.1 True 215 lncRNA 0.40 3 12809123 12809738

Neighbor

gene id symbol gene type direction distance location
dclre1b dclre1b coding upstream 10756 12792216 ~ 12798367 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 25966 12775926 ~ 12783157 (+)
LOC113531715 LOC108265567,LOC108414659 coding upstream 146978 12659028 ~ 12662145 (+)
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding upstream 154440 12651225 ~ 12654683 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding upstream 160016 12646689 ~ 12649107 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding downstream 106700 12916438 ~ 12921186 (+)
c8h1orf194 c5h1orf194 coding downstream 168289 12978027 ~ 12979366 (+)
inavaa LOC108264883 coding downstream 175689 12985427 ~ 12994779 (+)
LOC113534124 NA coding downstream 245712 13055450 ~ 13061438 (+)
trnav-cac_9 NA coding downstream 252198 13061936 ~ 13062008 (+)
G131605 NA non-coding upstream 79601 12712625 ~ 12729522 (+)
G131606 NA non-coding upstream 96638 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding upstream 107622 12700712 ~ 12701501 (+)
LOC117597859 NA non-coding upstream 275865 12519894 ~ 12533258 (+)
G131282 NA non-coding upstream 582761 12226152 ~ 12226362 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 127566 12937304 ~ 12941456 (+)
G131721 NA non-coding downstream 193657 13003395 ~ 13006090 (+)
G131715 LOC108265908,LOC108442391 non-coding downstream 212478 13022216 ~ 13023846 (+)
G131930 NA non-coding downstream 464397 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 505705 13315443 ~ 13315663 (+)
rbm15 rbm15,LOC107731203 other upstream 204418 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 579122 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 813271 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1095091 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1112332 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 895428 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1080666 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1140199 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1512434 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 2130563 14940301 ~ 14982884 (+)

Expression


Co-expression Network