LOC117597798


Basic Information

Item Value
gene id LOC117597798
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15630453 ~ 15640958 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578565.1
GAGTCGTTGTGAAAGAGGATCTGGGTGGCACTTCTGCACATGGCCCTGCAGTGCACTGAGACACaggcaaacacaaacatacGCGTGCAGCCTGTGTGCCCGAGCCAAAACTCAACACAACGCAACACAATGCATACCTCAGAGAATGTTGAAAGCCTCACTCTGAATTTTCTGCTGTGCTTTCCATCGATTGTCTCATGTAAATGATTAATGGACAGGATGGCAGGGAAAAGAATGGAAGGCTTACAGCCCATAAAGTGACCCTCTGGATATTGCATCATACAAAGTATACTGACAGCTGGAATCTTTCCAATCACTCCACCACATCAGATATTCTTTCTCAGCAAGTGGCTCCTTGTGCTCACATCAGCTAAAGATGACACCTCATCTTTGCAGACATCTCAACTTGCCTCAGAGACATCACATTCTGGATGAAGGTTCACTCTCACTCCAGCTCAACCTATCATCATAGCCTGTCATTACAATTGTCATTACAGCAAGTCCTTAAATTTTAGCCCTCCTCCACTGTCCAGCTCAGCTCATtgtcattattatcatcaagGTCCACCAGGAGCCTTGGGGTAATGATTGATGACCAGCTAAGCTCTCAAACTCTCAAGATTTGCTCTGTatgaaaacaggaagctcaGGTCTCTTCCAGATACTCGCCATCTCACAACTCTATACTGCTCACCAAATCCGcttgcagtaatgatccaaatGTGGAAGTTATAGGTCCTCGTCTACTGACTGGCCAGTGGAAGTTCATCTTCTTACAAGGAATCATTTATGGCATTCATGGCATTGCATACTGATCACTAAGATGTGTTTGGTAGCAAACAGTGATTGGTGATAGCACCACTGTATGGTGCTGGTCCTCTTTTCACATGTGCTTTCCTTACACTTTTCAAGAATTCTTGGAAGACAAGAAGTCACTTAAGATTGATGCAGAAactcatcaataataataataataataataataataataatatgtttaatttatatagtgcATTTCTCACACccaaggtcactttacaattacaaaaaacaaacacagaaaaacacagagtcCTCCAAAAGCTTCTGGGATCTAATTTCAGTGGAATATCTGCTCATAATCTCACACAGCCTGTACAGCCACAATGCCACCGGGCAACACTGCTCAGAACGCCACACCATGGAGCCACAAAGTGAGCACAGACACATTGCTGCACAGAGTGTTGAGCAGTCCCAAGACCACTCAGAATAATCATACTCTCCACCATCGACAAGAGCAACAGGCACACCGTAGTCCATAGCAAGCAGGAGGACGCACATCACTCATCAGTGCTTTCACTTTAATTCATATACGTACATCTCAGATGTGCTATGTTTGTGGTGATTAGTAAACTGTGCTCCTAATAATtatgtactattattattttgtattattatatattactctAATTTAGCCTTCTTGAAGACTGCATAATTTGTACTTTAACTAAGTGCTCTGTTACTAGCAGTCCTGAGTATTAGCACTAAAATTCTAACCTACTGTATGTGTGATGCACAGAGGGAAACTCTGATACGAGATGTGTAGAGGACAACAAGGTCAGAATGACAAACAATTAAAGTGATGCTCTGACTTtttaatattatcattatttatatcaGTAAAAGTTTTACACCAGATGTCCTAATGAGTTGACCCCCACTGTGTAACAGCCCATGACACAAAGTATGCGGGAATTTAAGACCTATcctataattattaatacaggATTACCTTAAAAGTTTACTCATTAATTTTACTCAAAAGTTTATACAATAATTTCATATCTACCATGTTCTCTGGCTCTCTGTTTTCCTACAACTAGctaactgtatttgtttttggtaAACCGATGTGTAGTCTTGAAGGATTTCTGTCATTGTCTGCTTCTGCTCCATGCTTGGATTGTATTTTGACTCATTTGTAAGTTACCATGGCTATAATTGTCtaccaagtaaaaaaaaaaaaagtaaatgtaaactCAGATTACATATAAAGCTCTAATTGTGAA
>XR_004578566.1
AAGAGAACCAACACCACAGATGACACCTCATCTTTGCAGACATCTCAACTTGCCTCAGAGACATCACATTCTGGATGAAGGTTCACTCTCACTCCAGCTCAACCTATCATCATAGCCTGTCATTACAATTGTCATTACAGCAAGTCCTTAAATTTTAGCCCTCCTCCACTGTCCAGCTCAGCTCATtgtcattattatcatcaagGTCCACCAGGAGCCTTGGGGTAATGATTGATGACCAGCTAAGCTCTCAAACTCTCAAGATTTGCTCTGTatgaaaacaggaagctcaGGTCTCTTCCAGATACTCGCCATCTCACAACTCTATACTGCTCACCAAATCCGcttgcagtaatgatccaaatGTGGAAGTTATAGGTCCTCGTCTACTGACTGGCCAGTGGAAGTTCATCTTCTTACAAGGAATCATTTATGGCATTCATGGCATTGCATACTGATCACTAAGATGTGTTTGGTAGCAAACAGTGATTGGTGATAGCACCACTGTATGGTGCTGGTCCTCTTTTCACATGTGCTTTCCTTACACTTTTCAAGAATTCTTGGAAGACAAGAAGTCACTTAAGATTGATGCAGAAactcatcaataataataataataataataataataataatatgtttaatttatatagtgcATTTCTCACACccaaggtcactttacaattacaaaaaacaaacacagaaaaacacagagtcCTCCAAAAGCTTCTGGGATCTAATTTCAGTGGAATATCTGCTCATAATCTCACACAGCCTGTACAGCCACAATGCCACCGGGCAACACTGCTCAGAACGCCACACCATGGAGCCACAAAGTGAGCACAGACACATTGCTGCACAGAGTGTTGAGCAGTCCCAAGACCACTCAGAATAATCATACTCTCCACCATCGACAAGAGCAACAGGCACACCGTAGTCCATAGCAAGCAGGAGGACGCACATCACTCATCAGTGCTTTCACTTTAATTCATATACGTACATCTCAGATGTGCTATGTTTGTGGTGATTAGTAAACTGTGCTCCTAATAATtatgtactattattattttgtattattatatattactctAATTTAGCCTTCTTGAAGACTGCATAATTTGTACTTTAACTAAGTGCTCTGTTACTAGCAGTCCTGAGTATTAGCACTAAAATTCTAACCTACTGTATGTGTGATGCACAGAGGGAAACTCTGATACGAGATGTGTAGAGGACAACAAGGTCAGAATGACAAACAATTAAAGTGATGCTCTGACTTtttaatattatcattatttatatcaGTAAAAGTTTTACACCAGATGTCCTAATGAGTTGACCCCCACTGTGTAACAGCCCATGACACAAAGTATGCGGGAATTTAAGACCTATcctataattattaatacaggATTACCTTAAAAGTTTACTCATTAATTTTACTCAAAAGTTTATACAATAATTTCATATCTACCATGTTCTCTGGCTCTCTGTTTTCCTACAACTAGctaactgtatttgtttttggtaAACCGATGTGTAGTCTTGAAGGATTTCTGTCATTGTCTGCTTCTGCTCCATGCTTGGATTGTATTTTGACTCATTTGTAAGTTACCATGGCTATAATTGTCtaccaagtaaaaaaaaaaaaagtaaatgtaaactCAGATTACATATAAAGCTCTAATTGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578565.1 True 2048 lncRNA 0.40 3 15630453 15640958
XR_004578566.1 False 1691 lncRNA 0.38 2 15637918 15640958

Neighbor

gene id symbol gene type direction distance location
LOC113533162 NA coding upstream 147757 15473676 ~ 15482696 (+)
LOC113535909 LOC103035969,LOC108265984,LOC108430321 coding upstream 166570 15454048 ~ 15463883 (+)
csgalnact1b LOC108265223 coding upstream 177710 15442500 ~ 15452743 (+)
spinb LOC108265781 coding upstream 190766 15418464 ~ 15439687 (+)
lrrc2 lrrc2 coding upstream 227729 15398272 ~ 15402724 (+)
prxl2c NA coding downstream 258620 15899578 ~ 15905498 (+)
cdc14b cdc14b,LOC108265480 coding downstream 266571 15907529 ~ 15920012 (+)
znf367 znf367,LOC107704585,LOC107726881,LOC107568105 coding downstream 282332 15923290 ~ 15927646 (+)
smyd1b LOC108265070,LOC108430330,LOC107712675,LOC107569675,LOC107661523 coding downstream 355367 15996325 ~ 16003311 (+)
LOC117597822 LOC108265070,LOC108430330,LOC107661523,LOC107712675,LOC107569675 coding downstream 364524 16005482 ~ 16010899 (+)
G133386 NA non-coding upstream 24114 15597408 ~ 15606339 (+)
G133342 NA non-coding upstream 204081 15425189 ~ 15426372 (+)
G133330 NA non-coding upstream 228691 15401446 ~ 15401762 (+)
G133307 NA non-coding upstream 266482 15354461 ~ 15363971 (+)
G133306 NA non-coding upstream 286422 15343754 ~ 15344031 (+)
G133617 NA non-coding downstream 330902 15971860 ~ 15972109 (+)
G133635 NA non-coding downstream 401882 16042840 ~ 16043039 (+)
G133721 NA non-coding downstream 523728 16164686 ~ 16170597 (+)
G133722 NA non-coding downstream 530227 16171185 ~ 16171500 (+)
G133724 NA non-coding downstream 531332 16172290 ~ 16172533 (+)
srp19 srp19 other upstream 245629 15378942 ~ 15384824 (+)
commd10 commd10 other upstream 647569 14940301 ~ 14982884 (+)
trnae-cuc_19 NA other upstream 650549 14979833 ~ 14979904 (+)
G132595 atoh1 other upstream 1307003 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 1607766 13949937 ~ 14022687 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 361103 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 761790 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 939299 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1075175 16716133 ~ 16737984 (+)
gucd1 gucd1,LOC102792582 other downstream 1219018 16859976 ~ 16868768 (+)

Expression


Co-expression Network