trnae-cuc_19


Basic Information

Item Value
gene id trnae-cuc_19
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 14979833 ~ 14979904 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnae-cuc_19
tccctggaggactagtggttaggcctcggcgctcTCACCGCCGTGGCCCGGgatcgattcccggccagggaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnae-cuc_19 True 72 tRNA 0.68 1 14979833 14979904

Neighbor

gene id symbol gene type direction distance location
ap3s1 ap3s1 coding upstream 42389 14921143 ~ 14937444 (+)
prf1.5 LOC108265013 coding upstream 700552 14272988 ~ 14279281 (+)
mpeg1.1 LOC108265423,LOC108437597,LOC108437601,LOC108257561 coding upstream 710404 14266625 ~ 14269429 (+)
slc20a2 slc20a2,LOC107724891,LOC107602837,LOC107594502,LOC107711867,LOC107669617 coding upstream 747704 14199703 ~ 14232129 (+)
ercc6l2 ercc6l2,LOC107689281 coding upstream 808040 14154858 ~ 14171793 (+)
dmxl1 dmxl1,LOC107571775 coding downstream 97766 15077670 ~ 15112818 (+)
prr16 prr16 coding downstream 155782 15135686 ~ 15147422 (+)
LOC113532232 lox coding downstream 176935 15156839 ~ 15163360 (+)
sncaip sncaip coding downstream 185741 15165645 ~ 15174722 (+)
snx2 snx2 coding downstream 215149 15195053 ~ 15209082 (+)
G132968 trim36 non-coding upstream 155470 14821982 ~ 14824363 (+)
G132959 NA non-coding upstream 235687 14742482 ~ 14744146 (+)
LOC113529916 NA non-coding upstream 238871 14722430 ~ 14740962 (+)
LOC117597773 grid2,LOC106580171 non-coding upstream 496097 14474642 ~ 14483736 (+)
G132603 NA non-coding upstream 651964 14327652 ~ 14327869 (+)
G133220 NA non-coding downstream 229611 15209515 ~ 15209846 (+)
G133260 NA non-coding downstream 319280 15299184 ~ 15299387 (+)
G133306 NA non-coding downstream 363850 15343754 ~ 15344031 (+)
G133307 NA non-coding downstream 374557 15354461 ~ 15363971 (+)
G133330 NA non-coding downstream 421542 15401446 ~ 15401762 (+)
G132595 atoh1 other upstream 656383 14322172 ~ 14323450 (+)
aopep c5h9orf3,cunh9orf3 other upstream 957146 13949937 ~ 14022687 (+)
dock8 dock8 other upstream 1031025 13890404 ~ 13948808 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other upstream 1188516 13705166 ~ 13791317 (+)
rbm15 rbm15,LOC107731203 other upstream 2375128 12599698 ~ 12604705 (+)
srp19 srp19 other downstream 399038 15378942 ~ 15384824 (+)
G133631 smyd1b,fabp1,LOC108265070,LOC108430330,LOC103043953,LOC108430333,LOC107704576,LOC107579792,LOC107573351,LOC107712467,LOC107726869 other downstream 1022157 16002061 ~ 16018818 (+)
si:ch211-166a6.5 LOC108265755,LOC107714554 other downstream 1422844 16402748 ~ 16419509 (+)
mtmr3 mtmr3,LOC107699659 other downstream 1600353 16580257 ~ 16621766 (+)
bicdl1 bicdl1,LOC107724381,LOC107699624 other downstream 1736229 16716133 ~ 16737984 (+)

Expression


Co-expression Network