trnaf-gaa_25


Basic Information

Item Value
gene id trnaf-gaa_25
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 13064050 ~ 13064122 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaf-gaa_25
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTaaaggtccctggttcgatcccgGGTTTCGGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_25 True 73 tRNA 0.53 1 13064050 13064122

Neighbor

gene id symbol gene type direction distance location
trnav-cac_9 NA coding upstream 2042 13061936 ~ 13062008 (+)
LOC113534124 NA coding upstream 2612 13055450 ~ 13061438 (+)
inavaa LOC108264883 coding upstream 69271 12985427 ~ 12994779 (+)
c8h1orf194 c5h1orf194 coding upstream 84684 12978027 ~ 12979366 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding upstream 142864 12916438 ~ 12921186 (+)
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding downstream 49584 13113706 ~ 13134629 (+)
wasb was coding downstream 72567 13136689 ~ 13145207 (+)
gpr173 gpr173,LOC108265110,LOC107549979,LOC107731146,LOC107678674,LOC107549585,LOC107745752 coding downstream 150344 13214466 ~ 13225319 (+)
nol4la nol4la,LOC108265968,LOC108412512,LOC103039117,LOC107550513,LOC107680239,LOC107745834,LOC107731219,LOC107549982 coding downstream 245768 13309890 ~ 13352603 (+)
trnae-cuc_18 NA coding downstream 305426 13369548 ~ 13369619 (+)
G131715 LOC108265908,LOC108442391 non-coding upstream 40204 13022216 ~ 13023846 (+)
G131721 NA non-coding upstream 57960 13003395 ~ 13006090 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 122594 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 254312 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 334528 12712625 ~ 12729522 (+)
G131930 NA non-coding downstream 210013 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 251321 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 253176 13317298 ~ 13317506 (+)
G131962 NA non-coding downstream 261382 13325504 ~ 13325713 (+)
G131968 NA non-coding downstream 301758 13365880 ~ 13368176 (+)
rbm15 rbm15,LOC107731203 other upstream 459345 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 834049 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 1068198 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1350018 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1367259 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 641044 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 826282 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 885815 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1258050 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1876179 14940301 ~ 14982884 (+)

Expression


Co-expression Network