G173511


Basic Information

Item Value
gene id G173511
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 81875 ~ 82513 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205432
tgtgtgtgtgtgtgtcagggcaTTAAATCTAAGCAATATCACATGTGCAGGAGTGCTGTtacactgaatatcagcacgacTGTGACTCGGCCACAGTCACAGGTAGTCACAGGTAGTCACAGGTAGTCACAGGTAGTCACAGGTAGTCACAGGTAGTCACAGTcttgctgatattcagtacaataGCAGTGAGCGTGATGTTGCTGTTATGCAGCAGCtctataaacaataaattaatatggagtaactgacatttcagtaaCTGTCatcaatatggccaaatattttgtttacttttgctcAATCAACTAAAATGGTTTCCAAAGAAGCCACAGTCGGATAGAGTGTTGcgtgttgccatggtgacacacagactgactgacagcccatagtaagtgtagtaacggtttcagtgTAAAGAATTATTGGTACAGTTGTAAtgttatgtagtgaacacagacgagcggagtgatacacgcAGTGACACGTCGCAGTGCTGTTCCAGTAAACATCAGCGCTCTCACAAcgccaatcagattagtggaccagaactaactgttgcataaatattatatttattatttttatttcctttttccacatacatattattttaaGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205432 True 619 lncRNA 0.40 2 81875 82513

Neighbor

gene id symbol gene type direction distance location
ric3a NA coding upstream 185217 267730 ~ 272572 (-)
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding upstream 216711 299224 ~ 335808 (-)
stk33 stk33,LOC106562365 coding upstream 366104 448617 ~ 470183 (-)
rerglb rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038 coding upstream 391318 473831 ~ 480942 (-)
trim66 trim66,LOC107750616 coding upstream 404132 486645 ~ 511403 (-)
G173573 NA non-coding upstream 42994 125507 ~ 127757 (-)
G173581 NA non-coding upstream 55680 138193 ~ 139136 (-)
G173586 NA non-coding upstream 73029 155542 ~ 215461 (-)
G173602 NA non-coding upstream 101514 184027 ~ 185814 (-)
G173603 NA non-coding upstream 102938 185451 ~ 187162 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 47709 30281 ~ 34166 (-)
G174207 LOC108270943,LOC108444425 other upstream 878983 961496 ~ 963078 (-)
fbxl8 fbxl8 other upstream 916546 999059 ~ 1003032 (-)
G174247 fbxo22 other upstream 975143 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 1774370 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1932209 2014722 ~ 2022231 (-)

Expression


Co-expression Network