Fish Transcriptome and Expression Database

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economic fish

G173573

Basic Information

Item	Value
gene id	G173573
gene name	NA
gene type	non-coding
species	striped catfish (Pangasianodon hypophthalmus)
category of species	economic fish

Chromosome Information

Item	Value
chromosome id	NC_047605.1
NCBI id	CM018551.1
chromosome length	26640196
location	125507 ~ 127757 (-)
genome version	GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205498
tttaaccctcagcgtctaacagtcagtgtctaacagtcagtgtttaaccctcagcgtctaacagtcagtgtctAACAgtcagcgtctaacagtcagtgtctAACAgtcagcgtctaacagtcagtgtctaacagtcagcgtctaacagtcagtgtttaaccctcagcgtctaacagtcagtgtctaacagtcagtgtttaaccctcagcgtctaac

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TU205498	True	216	lncRNA	0.46	3	125507	127757

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
pde3b	pde3b	coding	downstream	29377	45726 ~ 96130 (-)
ric3a	NA	coding	upstream	139973	267730 ~ 272572 (-)
lmo1	lmo1,rbtn1,LOC107085592,LOC107593328	coding	upstream	171467	299224 ~ 335808 (-)
stk33	stk33,LOC106562365	coding	upstream	320860	448617 ~ 470183 (-)
rerglb	rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038	coding	upstream	346074	473831 ~ 480942 (-)
trim66	trim66,LOC107750616	coding	upstream	358888	486645 ~ 511403 (-)
G173511	NA	non-coding	downstream	42994	81875 ~ 82513 (-)
G173581	NA	non-coding	upstream	10436	138193 ~ 139136 (-)
G173586	NA	non-coding	upstream	27785	155542 ~ 215461 (-)
G173602	NA	non-coding	upstream	56270	184027 ~ 185814 (-)
G173603	NA	non-coding	upstream	57694	185451 ~ 187162 (-)
G173639	NA	non-coding	upstream	135427	263184 ~ 266538 (-)
calca	calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036	other	downstream	91341	30281 ~ 34166 (-)
G174207	LOC108270943,LOC108444425	other	upstream	833739	961496 ~ 963078 (-)
fbxl8	fbxl8	other	upstream	871302	999059 ~ 1003032 (-)
G174247	fbxo22	other	upstream	929899	1057656 ~ 1059234 (-)
cd82a	cd82	other	upstream	1729126	1856883 ~ 1933222 (-)
LOC113536731	hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694	other	upstream	1886965	2014722 ~ 2022231 (-)

Expression

Co-expression Network