G173581


Basic Information

Item Value
gene id G173581
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 138193 ~ 139136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU205506
gggcattgtcatgctggaacaggtttcagcctcttagttccagtgaagggaaactgtaacgctacagcacacagagacgctctacacaactgtgtgcttcagactttggtgaagaacctcatatgggtgtgatggtcaggggtgcacatacgtttggccatatagtgtatataaatggAACCTGCTAAAACACAAACTGAGTGTTCCAGTTCTTCTTGAGTTCTTGTACTCAGTCAGTTCCTCACCTGGCTCTTGGCGCGGATGCGAATGTGGCCGTTGACCGGAGCGTCAGGTCCGAGATGGATGGGCTTCTCGATGCTCACGTTAGCCAGAGCATCCTCACCGAAGATGGAGCGAGCGTACAGGTTAGCAGCCATGAAACCACAAACACCAGAGAGAGCCCCTTCTCTGGAGTTAAACACTTCATGTTGGTGGAGCTGAGAATGTGCTGAAGATACTCGTTCAGCTCTGTGATGTTGGTGTTCACTGTAACCTTTAGAGaacaaggaggaggaggaagaggagaagtgAGATGTTTAAGCAATCATCACACAGTGTTTCACAGGGAGTACGGTTCTCTACCTTGTTCTCCCACTCGAACTCGGCCCACATCTGCCTGAACTCCGCGTCTGTGCACGAAGCCGGCTGGATGTAGTCCATGATGTCAATGTGGATGTCACTGAGAACCACACAGTTCCTGTCACTGGCTGCTCCTGACACGTCAtacactgcaaaacacacacacacacacacgttatacaccacacacacgcactatacactgcaaaacacacacacacacacacgttatacaccacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU205506 True 824 lncRNA 0.50 2 138193 139136

Neighbor

gene id symbol gene type direction distance location
pde3b pde3b coding downstream 42063 45726 ~ 96130 (-)
ric3a NA coding upstream 128594 267730 ~ 272572 (-)
lmo1 lmo1,rbtn1,LOC107085592,LOC107593328 coding upstream 160088 299224 ~ 335808 (-)
stk33 stk33,LOC106562365 coding upstream 309481 448617 ~ 470183 (-)
rerglb rerglb,LOC108271353,LOC108429104,LOC107674441,LOC107593310,LOC107586038 coding upstream 334695 473831 ~ 480942 (-)
trim66 trim66,LOC107750616 coding upstream 347509 486645 ~ 511403 (-)
G173573 NA non-coding downstream 10436 125507 ~ 127757 (-)
G173511 NA non-coding downstream 55680 81875 ~ 82513 (-)
G173586 NA non-coding upstream 16406 155542 ~ 215461 (-)
G173602 NA non-coding upstream 44891 184027 ~ 185814 (-)
G173603 NA non-coding upstream 46315 185451 ~ 187162 (-)
G173639 NA non-coding upstream 124048 263184 ~ 266538 (-)
G173685 NA non-coding upstream 316728 455864 ~ 456185 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 104027 30281 ~ 34166 (-)
G174207 LOC108270943,LOC108444425 other upstream 822360 961496 ~ 963078 (-)
fbxl8 fbxl8 other upstream 859923 999059 ~ 1003032 (-)
G174247 fbxo22 other upstream 918520 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 1717747 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1875586 2014722 ~ 2022231 (-)

Expression


Co-expression Network