fbxl8 (fbxl8)



Basic Information


Item Value
gene id fbxl8
gene name fbxl8
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 999059 ~ 1003032 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU206241
tggatggatggatgaatgaatggatggataaacaGATGGATGAACTGATGGATGAATGGACACTGGAGTTTGAAAGCAGTTCCtcagatgaatagatggataaacagatggatggatggatggatggatggatggatgaatgaacagatggatggatgaatgaacagatggatggatgaatgaactgatggatggatgaatggatggacacTGGAGTTTGAAAGCAGTTCCTCAGAGGACGCTGAACTTCTCCGCATCTCGCTGCTGAATCAGCTGAAAGCTGCGCCAGTAAAGTCTCAGACTGCGGAACTGATCTGCTGTAAACGCTGAAGATTAAAGAAGCCGCGCGGCTCGTTTTCACTCCGTTTTCCTGCATTAAGGTGAAGAGATGAAGAAGTTTTCCTCCGGATTTCAGCCTCTAACCGCAGCTCGTGCGCGCTGGGGACAAACAGGAAGCGCGCGCGCGTCGCGTCACGCGAGTTTCGTTTGCAGGTAACGTTAATGGAGCGcgagacagattttttttttttaaacatgaccaAAATAAATCGtaactttttaataaaatgttgtgtaTTCTAACGAAGTGAGAAATTCTCATTTATTAGACATAAACAGATCAAATTTCTCCAAAGTAAATATTTCCACTGACTGAAACAGTCTGACGTTTCAAGCTAACAAGCTACTTAGCTAAGTCAGTTagcaaaaaacatttcactggaAGCTAGAAAAGCtaataaacagcaaaaaatcTGGTCAGAAATAATTTAACTACTCACACACCGATGGGAAGAGCTTTGTCCGAAAAAACAGCAACACTTTACACTAAAGAAGTTGTTTTAAAAGTCGGACAAAACACAGTGCCTAAGTTGGTCAGTATGGGAACGCGG
>TU206242
AATATCTTGTCACACTGAAACAGATTAATGGAACTTCCAGAAGAAATCCTGGCAcacattttctctttcctgCCTCTGAAGGATAAATGTAATGCCTTCCTGGTGTGTAAATCATGGTCCAACAGCTTGACCAGTTCGAGTGCatggacacacactgagatCAGGTG
>XM_026930712.2
AAGTTTTCCTCCGGATTTCAGCCTCTAACCGCAGCTCGTGCGCGCTGGGGACAAACAGGAAGCGCGCGCGCGTCGCGTCACGCGAGTTTCGTTTGCAGCTCAGCTTGGCAATGAACTGGACAACTTGCCCTCGCCAAGATGGCGGCGGAGAGTTGACGTGTCTGACGTAACACTCTGACGCGGAAGAGTTAGAGGAAGTAATGATAAACAATATCTTGTCACACTGAAACAGATTAATGGAACTTCCAGAAGAAATCCTGGCAcacattttctctttcctgCCTCTGAAGGATAAATGTAATGCCTTCCTGGTGTGTAAATCATGGTCCAACAGCTTGACCAGTTCGAGTGCatggacacacactgagatCAGGTGTGAGTCTGGAGACTGTGTTCCTCAGAGGTTCTCTGACCTTCTACCGTGTATCAGACACCTAACGCTGATTGTCAGCGTGGCTGATCGTGCTCATCGGGAGACTGGATTGTGGGTTCTGCAGCAGGTTCTAGCCAGGGGTGAAGGCCGACTGCGCGCGTTATGCGTCAGCTGTTTGGAGAACCCGCCTCTGTTTTACGCAGGACAGGACCTGCTGCAGGGATTGGTGGACGTCTTGACAAACGGGTCGTCCCTCATGGCGCTGGACCTGAGGGGCGTGCCGTTCACCCTGAGCGACAACTTCGTCAAGAGCGTAGCCGCGCTGTGCCCCACCCTGCGAAGTCTGTTCATCAATAACAGATCTCTGGTGTGCGGCGTCGTCTCGGAGACAATCAGGGACGTCCTGAAACGCTGTCCAGTGCTGAACACCATCGGGCTCTTCCAAGCCAGCGTGTCTCATGATGTCCTCCGAGACCTCATGAAACCCCAGAGAACAAAACTGAAGCTGCTGGAGCTGCGCTGCGAGCGCTCGCTGAAGTACGTCCCGCAGCTTTGCGACCAAATCTGGGCAGACTTGAGATGCAGGCTTCCCGGACTGAGAGTGGACCTGGAGCTGGACCACACGCTCCCGGAGCTGCAGGTTCCCGGCGTGCTTCAGCCCAGCATCCCTGTGAGACAGCTCCGCCTCCACACCTGGACCTTTCTGCTGGATGAGATACGCGTCGTGACGCAGAGTTACGCAGGAACGCTGGAGGTGCTCGAACTGCAGACCACCGCGTCCCCCGAGCTCAACGCGGCGCTGGTCGCCTTGGCAACGCAGTGCACGAAACTCCGCGAGGTTCACTGTTACTGCGTGGTTTCACAGAACGTGATAGAAGCGTTCTGCTCACTGTGTCCTGAtttacacagatacacactcaaAACACGCAAAGAGCCACACCCCTGGACCTGCACCACTCttagataacacacacacacacacacacactcggccaCTTTTACACTCTTTCACACcatgttgaattctggatcctgattggtcagaaggtgttgattagttttctataacagcagctctgacagtagcacagctgcaaatcacaggtttataattaatttataattaacgtgctcgttctaatacgttatcgtttctatagtaacagtgatTTATAATAagcagatttcttttttaaaaatgtgaaatcgttgatctgtgagatgtttatttaacatttatggaaagagtctctatttttaatctttttcctattacagcacgtCGTTATTTCAAAATGAAGCCAAATGagatattttgtttacaatctGTAAAATTGTCACAGTGtatattatgatttttaataatttaaacaagCTAAATATTAATGACTGACAGAAATATGGACTTTTACAGATCTCTTACTGTTTGTTTAGGATTTCTGtatcactgaatgtttttttgtttgtttctgaatAACGTTTGTCACTCTGAtatctttttatctctttctccaCCTCTGTGGAAAATCAGTATTTTTTGGTTTAGGATGCACGAGAGCCGTTTTCCTGATTCTTCTTTACATTTAACTCAAATTTTTGCGTCTGTTTGAACTTTTCCTGTCTTCACTACGACTGAAAGCACTCTTGGAGGTATAAAAGGTTTCATTTAGTATCTGAAATTGTTCTTCAATTTGTTAACatttctatgtagaaccctacagcagaaTTTCATCcgaggttccaagtagaacccttcaGAAAGCTAGAACCGTTAGTCATCCTCAGACCTCGAGGAACATTTTTTCCTAAGTTTTGAGTTATTAGACACTATAACaagacacacagaaaacactattaaatatgaatgaaacaatatgaatgtttattgttgtttataaaCTGTATAACAGAGGCAcggtttattatttattcacccACAAAACAACgggggggtgcaaacttttgcacttttatTACACAGTAACATGTCTTCGTTGATGTATAAAGTATTGATTAAA

Function


symbol description
fbxl8 Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and entrainment of circadian clock by photoperiod. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL8 (F-box and leucine rich repeat protein 8).

NR:

description
PREDICTED: F-box/LRR-repeat protein 8 isoform X4

GO: NA

KEGG:

id description
K10274 FBXL8; F-box and leucine-rich repeat protein 8

RNA


RNA id representative length rna type GC content exon number start site end site
TU206241 False 890 lncRNA 0.42 1 1002143 1003032
TU206242 False 167 lncRNA 0.43 2 1001160 1001423
XM_026930712.2 True 2391 mRNA 0.46 4 999059 1002638

Neighbor


gene id symbol gene type direction distance location
LOC117598426 NA coding downstream 46730 951385 ~ 952329 (-)
thap11 thap11 coding downstream 63963 932231 ~ 935096 (-)
nrn1lb LOC108270602 coding downstream 85892 908291 ~ 913167 (-)
adgrg1 NA coding downstream 288828 689168 ~ 710231 (-)
si:dkey-181f22.4 LOC108271158 coding downstream 320968 665577 ~ 678091 (-)
aph1b aph1b,aph1a,LOC108271374,LOC108444443,LOC107700410 coding upstream 127999 1131031 ~ 1137703 (-)
slc38a8b LOC108271372,LOC108444426,LOC107741399,LOC107577425 coding upstream 135489 1138521 ~ 1147976 (-)
tmppe tmppe,LOC107585964,LOC107674465 coding upstream 145024 1148056 ~ 1159962 (-)
sox6 sox6 coding upstream 321619 1324651 ~ 1497726 (-)
plekha7b plekha7 coding upstream 514314 1517346 ~ 1638262 (-)
LOC113536472 NA non-coding downstream 10590 985591 ~ 988469 (-)
G174156 gfod2,LOC107750644,LOC107594647,LOC108444435,LOC107700402 non-coding downstream 45672 862931 ~ 953387 (-)
G174150 NA non-coding downstream 168790 829936 ~ 830269 (-)
G174147 NA non-coding downstream 175163 823639 ~ 823896 (-)
G174127 NA non-coding downstream 200227 796394 ~ 798832 (-)
G174233 NA non-coding upstream 914 1003946 ~ 1004217 (-)
G174235 NA non-coding upstream 5736 1008768 ~ 1009191 (-)
G174181 tradd,LOC107674458,LOC107750529,LOC107700380,LOC107594616 non-coding upstream 6746 1009778 ~ 1010691 (-)
G174180 NA non-coding upstream 8085 1011117 ~ 1012848 (-)
G174239 NA non-coding upstream 21452 1024484 ~ 1024889 (-)
G174207 LOC108270943,LOC108444425 other downstream 35981 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 964893 30281 ~ 34166 (-)
G174247 fbxo22 other upstream 54624 1057656 ~ 1059234 (-)
cd82a cd82 other upstream 853851 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 1011690 2014722 ~ 2022231 (-)
G175098 NA other upstream 1599382 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 1751323 2754355 ~ 2756525 (-)

Expression



Co-expression Network