G174345


Basic Information

Item Value
gene id G174345
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1465494 ~ 1469982 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206375
GTTACAGTTCTCCACTGACCCTCGCCTCGATTATTGTCAGAGACGATGTTCAATTGGGGTCAGCGTTTTAATCTCATCAGTGAAATTCTCCTgctctgctttctctcttcccTCAGGAGGGACCCAAGAGCCTAACATTTAATCAACGGAAATTTAGAATAAGATTTAATTGTTGGAAATTGAATTATTGTAACTCGTAAGATCTCAAAGGAAAGGGACGGCGTCCTCAGTGAAGTGTTTCGATTTCCGATCAGTTTTCCACTAAGTTCTCGTGGAGTTTTATTAGGATATGTCACTGGTTAAAAATCTGGTATTAAGCGTTATGagctttttccttttcttacaCAACAATCTTTCCATCATTACAGTAACTTTGCTACCTTTATCACATGATCCTGAGCCGTTTGTTACATCTTTACCAGAATTTTGTTACATGTATTTGTTACAATATTGTTACATTGTTACGTTGCAGTGTCTGTAGTTACATCGTTACAAGAATTTTGTTACATTGTTACACAATGTGGAGTCTTTTGTTACACTTTTTACAAGAAATTTGCTACATTGTTACACcatgcagagtttttttttttgttacattgcCTCATGATGAAGAGTCTTTAGTTACATTGTTGCAAGATTTTTCTTACATGGTTACATGGTGCAGTCTGTTGTTACATGGTTTCAGGAATTTTGGTACATTGTTACGTGCTGAGAAGTCTTTTGTTACATTGTTATACGAGTTTAGTTACATTGCTACATGATGCAGAGTCTTTTGTTACACCTTTATAAGAATTGTTACACAATGTGgaatcttttgtttttacaatttGCAATAAATTCCTGTAACGATGTAACAAATGACTCTGTGGAATGTTACGTTGTTGTAGGAGGCAGAATCTtttgttacactgttacatgaTGAAGTCGTTGCTGATACGCTTGTTTAATGCCCAGCGTTTTTCAGCACTGTCTTTAACTAGTTCAGGCCAAAAAGTCTGGATTTGATTCTGAAGCAGCCATTAATTACACGCCACTTGACATTTCCTACcatcctgtctcactctttaGTGTGTTCACGTCCCAGCAACAGGTCCTCATAGCCCCGGCCGTAGCTCTTTCCAAGACTTATTCTCTATATGGCTTCTTTTTTGATACCTCAATGTGCTTTATTTAACTCTCGAAACAGCGAAACGTAATACTGACTTGGCTGCATTCCTTCCTTTCAACCCACAGACGTTAGcataggaggaaaaaaagtgcCGTTTCACCTATTAGCTTTACGGAGGCGCACGCCGCTGCACTGAAGAACATGTCATTAATCTCCAGGCTTCCACAGCTGGGAAGCGTAATGCATAACTAAAAGTCctgtaaaatgaattaatgatttCAACCATGAACTTTTCTCCCAAAACGCCATGAATCCTCCGGAGCTGATAATGCGCGCGCCGCTCCCCAACCCCGGGGGTGTGAAATCCGTGTTATGTCGAGAGTTTGTGAGTTAATTGATTCGCAAATTATTTAAAGTTTGTGGGGCTCGGGGGAGTGCTCGGCTCTAATGACGCCCATTCCCAAAGAGTTGAacgagggggaaaaaaactttgtcgtctttctgtctttccatcGCTCTTTTCTTCAATGAATTGTAATAAGCTAACAAGCTTAATgaaagacacacagaggccccgtttttttttcctcctgtccTCCCCCACAAAGCCTTGTCTCAGGGCCTTGAAACCTCTCATTGCCGGACGGCTCTCGGATGAAGGCGGCATTCGCACAGTAAATCCTGAGTGATTGTTGGGAGTGAATGCCTGCGCTGCTTTCGCATTGTGTCAGTTCTCCGAGGATAACCTTGGACAAGTGTCTCGCTCAAGAGAAAACGGAGAAGACtagttaattgttttttttcttttttctttttttcagacacTTCCAGTGTAAGCATACGTACAGACGCTCACACTGTGAATAACGTGCAccttataatataaaaaaggacgttataaaagggtgtgcacagaCAAAGCAACAATTTTCAGTAGTTTTTCATGTCTATGTGTTTCTAAACACACACGCGGCCTTGATTGCGTTCAGTTTCACACAAGCATAATgtacactatttaaaaaaaagtagtctctaTCCTGATTGTTCGCACTCccgttttattttattttattttattttgtcttgcCTTGTGAAAAAAGACATCATTCTTTAAGCAATGCCATATGTATAAATCACATTCAAACCGCATTTATaatatacagagaaaaaaacgCCTGTTCAGGAACAATTCTAGGATTTATAAAAAGCACTTTTCTGATTTCATGCTGCTGTTGTAACACGAGGGTTTTTTGTTACACAAATCTTGGCCTTGAATTGCAAGATGGGAAAAAATTTGCACATTGAGAGAGAATAATGAAACTATAGGGGATATTATAGTTGACGGTACTTTTTTTGCTCCACTGCAAACCAAAGAGTCATTCTGgagtttttttaaagtagaagATGGTAAAATAATAACGAGTTTTAGATAtatttgtgcgtgtgtgtgtgtttatatgtgtgtgagtgtgtgaactcAAGCAAGTAAAGCAACCacgctttatttaaaaaaatgttttaattataagTAGTTTTCCTTGCTCAGCTGGTGAGGTTGTGAGTCAAAGCGTACGGTGTGTAACCCGCTAAGTGGCTGCTGCGTCTCCGGGCTAATATCAAGGAGCCTCCTAATCCGAGCCCCATTAGCGATCGCTGTCATTCAGACACATGGTGTCGAGctgatttaaataaaaccaaatgaaGATAGTTGTTTCTGCTCCCCTGGCTTCACTCATTGCCATAAACATATGCTCCGTGCCCCGCTTCTTTCCATCTTATTTATGACTTtaatttgttgtgtgtgtgttcatgtatgtgtgtgtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206375 True 2934 lncRNA 0.39 2 1465494 1469982

Neighbor

gene id symbol gene type direction distance location
tmppe tmppe,LOC107585964,LOC107674465 coding downstream 305532 1148056 ~ 1159962 (-)
slc38a8b LOC108271372,LOC108444426,LOC107741399,LOC107577425 coding downstream 317518 1138521 ~ 1147976 (-)
aph1b aph1b,aph1a,LOC108271374,LOC108444443,LOC107700410 coding downstream 327791 1131031 ~ 1137703 (-)
LOC117598426 NA coding downstream 513165 951385 ~ 952329 (-)
thap11 thap11 coding downstream 530398 932231 ~ 935096 (-)
plekha7b plekha7 coding upstream 47364 1517346 ~ 1638262 (-)
rps13 rps13,LOC107586033,LOC107700620,LOC106561079 coding upstream 177138 1647120 ~ 1653478 (-)
LOC113536795 NA coding upstream 177347 1647329 ~ 1647458 (-)
caprin1a caprin1,LOC108429133 coding upstream 197644 1667626 ~ 1687076 (-)
ext2 ext2,LOC107593432 coding upstream 307359 1777341 ~ 1831151 (-)
G174329 NA non-coding downstream 45749 1419369 ~ 1419745 (-)
G174325 NA non-coding downstream 51304 1409997 ~ 1414190 (-)
G174322 NA non-coding downstream 80976 1381317 ~ 1384518 (-)
G174319 NA non-coding downstream 128473 1334760 ~ 1337021 (-)
G174246 NA non-coding downstream 408587 1056698 ~ 1056907 (-)
G174352 NA non-coding upstream 61834 1531816 ~ 1532214 (-)
G174379 NA non-coding upstream 165410 1635392 ~ 1635656 (-)
G174390 NA non-coding upstream 246855 1716837 ~ 1717245 (-)
G174622 NA non-coding upstream 521262 1991244 ~ 1991701 (-)
G174617 NA non-coding upstream 524119 1994101 ~ 1995636 (-)
G174247 fbxo22 other downstream 406260 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 462462 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 502416 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 1431328 30281 ~ 34166 (-)
cd82a cd82 other upstream 386901 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 544740 2014722 ~ 2022231 (-)
G175098 NA other upstream 1132432 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 1284373 2754355 ~ 2756525 (-)
serf2 NA other upstream 2079883 3549865 ~ 3581987 (-)

Expression


Co-expression Network