G174352


Basic Information

Item Value
gene id G174352
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 1531816 ~ 1532214 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU206382
CGCCGCGCTCCGTTTTACTCCCACGTCATCCACCACGCTCCATTTTACTCCCACATCATCCACCACGCTCCGTTTTACTCCCACATCATCCACCGCGCTCCGTTTTACTCCCACATCATCCACCACGCTCCGTTTTACTCCCACGTCATCCACCACGCTCCGTTTTACTCCCACGTCATCCACCGCGCTCCGTTTTACTCCCACGTCATCCATC

Function

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206382 True 214 lncRNA 0.57 2 1531816 1532214

Neighbor

gene id symbol gene type direction distance location
sox6 sox6 coding downstream 34090 1324651 ~ 1497726 (-)
tmppe tmppe,LOC107585964,LOC107674465 coding downstream 371854 1148056 ~ 1159962 (-)
slc38a8b LOC108271372,LOC108444426,LOC107741399,LOC107577425 coding downstream 383840 1138521 ~ 1147976 (-)
aph1b aph1b,aph1a,LOC108271374,LOC108444443,LOC107700410 coding downstream 394113 1131031 ~ 1137703 (-)
LOC117598426 NA coding downstream 579487 951385 ~ 952329 (-)
rps13 rps13,LOC107586033,LOC107700620,LOC106561079 coding upstream 114906 1647120 ~ 1653478 (-)
LOC113536795 NA coding upstream 115115 1647329 ~ 1647458 (-)
caprin1a caprin1,LOC108429133 coding upstream 135412 1667626 ~ 1687076 (-)
ext2 ext2,LOC107593432 coding upstream 245127 1777341 ~ 1831151 (-)
tspan18a tspan18,tspan18a,LOC107585935,LOC107671373,LOC107593454,LOC107750555 coding upstream 300112 1832326 ~ 1874531 (-)
G174345 NA non-coding downstream 61834 1465494 ~ 1469982 (-)
G174329 NA non-coding downstream 112071 1419369 ~ 1419745 (-)
G174325 NA non-coding downstream 117626 1409997 ~ 1414190 (-)
G174322 NA non-coding downstream 147298 1381317 ~ 1384518 (-)
G174319 NA non-coding downstream 194795 1334760 ~ 1337021 (-)
G174379 NA non-coding upstream 103178 1635392 ~ 1635656 (-)
G174390 NA non-coding upstream 184623 1716837 ~ 1717245 (-)
G174622 NA non-coding upstream 459030 1991244 ~ 1991701 (-)
G174617 NA non-coding upstream 461887 1994101 ~ 1995636 (-)
G174606 NA non-coding upstream 513227 2045441 ~ 2050452 (-)
G174247 fbxo22 other downstream 472582 1057656 ~ 1059234 (-)
fbxl8 fbxl8 other downstream 528784 999059 ~ 1003032 (-)
G174207 LOC108270943,LOC108444425 other downstream 568738 961496 ~ 963078 (-)
calca calca,LOC108271361,LOC107700617,LOC107593372,LOC107688176,LOC107750650,LOC107586036 other downstream 1497650 30281 ~ 34166 (-)
cd82a cd82 other upstream 324669 1856883 ~ 1933222 (-)
LOC113536731 hsbp1b,hsbp1a,LOC108271362,LOC103023435,LOC108429110,LOC107553992,LOC107583924,LOC107561694 other upstream 482508 2014722 ~ 2022231 (-)
G175098 NA other upstream 1070200 2602414 ~ 2603211 (-)
G175048 zfhx3,LOC107679901,LOC107565374,LOC107738341 other upstream 1222141 2754355 ~ 2756525 (-)
serf2 NA other upstream 2017651 3549865 ~ 3581987 (-)

Expression


Co-expression Network